This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173286 (70 seq.)
>W1710871592
LMLK01000003
Gammaproteobacteria
Erwinia sp. Leaf53 [LMLK]
408336
408412
+
Pro
GGG
[ENA]
¡û
>W1712109966
NJFP01000003
Gammaproteobacteria
Hafnia alvei [NJFP]
4015413
4015489
+
Pro
GGG
[ENA]
¡û
>C009183
CP000653
Gammaproteobacteria
Enterobacter sp. 638 [CP000653]
3009772
3009848
+
Pro
GGG
[Ensembl]
¡û
>WENV180143602
OATY01000010
[OATY] human gut metagenome; faeces
78702
78778
+
Pro
GGG
[ENA]
¢þ
>W141350013
JCKH01000004
Gammaproteobacteria
Hafnia alvei FB1 [JCKH]
401839
401763
-
Pro
GGG
[ENA]
¡û
>WENV183727489
PJTP01000006
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
231336
231412
+
Pro
GGG
[ENA]
¢þ
>WENV183728886
PJTQ01001029
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1031
1107
+
Pro
GGG
[ENA]
¢þ
>WENV183739081
PJUE01001457
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1826
1902
+
Pro
GGG
[ENA]
¢þ
>WENV183739097
PJUE01001615
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1826
1902
+
Pro
GGG
[ENA]
¢þ
>WENV183740911
PJUF01017274
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
991
1067
+
Pro
GGG
[ENA]
¢þ
>WENV170000295
AEWW01004558
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
2830
2906
+
Pro
GGG
[ENA]
¢þ
>WENV170001418
AGFS01038101
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
61
137
+
Pro
GGG
[ENA]
¢þ
>C181031833
CP018628
Gammaproteobacteria
Lelliottia jeotgali PFL01 [CP018628]
3039626
3039702
+
Pro
GGG
-
¡û
>C181083766
CP023529
Gammaproteobacteria
Lelliottia amnigena FDAARGOS_395 [CP023529]
1967340
1967416
+
Pro
GGG
-
¡û
>C181166499
CP028520
Gammaproteobacteria
Lelliottia sp. WB101 [CP028520]
2533775
2533699
-
Pro
GGG
-
¡û
>C191021162
CP022725
Gammaproteobacteria
Erwinia persicina B64 [CP022725]
765555
765479
-
Pro
GGG
-
¡û
>C191148326
CP036175
Gammaproteobacteria
Klebsiella huaxiensis WCHKl090001 [CP036175]
1826659
1826583
-
Pro
GGG
-
¡û
>C191152024
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
2793384
2793460
+
Pro
GGG
-
¡û
>C191183702
CP040889
Gammaproteobacteria
Leclercia adecarboxylata Z96-1 [CP040889]
418213
418289
+
Pro
GGG
-
¡û
>C191196131
LR134135
Gammaproteobacteria
Lelliottia amnigena NCTC12124 [LR134135]
2949315
2949391
+
Pro
GGG
-
¡û
>W09106362
AAVF01000001
Gammaproteobacteria
Enterobacter sp. 638 [AAVF]
312296
312372
+
Pro
GGG
[ENA]
¡û
>W141710376
JMPI01000042
Gammaproteobacteria
Buttiauxella agrestis ATCC 33320 [JMPI]
53209
53285
+
Pro
GGG
[ENA]
¡û
>W141809824
JPRU01000002
Gammaproteobacteria
Buttiauxella noackiae agrestis [JPRU]
983060
983136
+
Pro
GGG
[ENA]
¡û
>W1910179101
BJFN01000001
Gammaproteobacteria
Buttiauxella sp. A111 [BJFN]
992340
992416
+
Pro
GGG
[ENA]
¡û
>W1910211947
FMIQ01000069
Gammaproteobacteria
Hafnia alvei GB001 [FMIQ]
4720
4644
-
Pro
GGG
[ENA]
¡û
>W1910576082
JRZZ01000042
Gammaproteobacteria
Erwinia sp. B116 [JRZZ]
24002
24078
+
Pro
GGG
[ENA]
¡û
>W1910650834
LYLP01000034
Gammaproteobacteria
Scandinavium goeteborgense CCUG 66741 [LYLP]
17463
17539
+
Pro
GGG
[ENA]
¡û
>W1910803933
MTCH01000033
Gammaproteobacteria
Erwinia sp. OLMDLW33 [MTCH]
4838
4762
-
Pro
GGG
[ENA]
¡û
>W1911492941
OBEF01000003
Gammaproteobacteria
Enterobacter sp. CC120223-11 [OBEF]
164754
164678
-
Pro
GGG
[ENA]
¡û
>W1911671464
QGAC01000019
Gammaproteobacteria
Erwinia persicina CFBP13511 [QGAC]
80850
80774
-
Pro
GGG
[ENA]
¡û
>W1911824471
QZWH01000038
Gammaproteobacteria
Buttiauxella izardii CCUG 35510 [QZWH]
39329
39253
-
Pro
GGG
[ENA]
¡û
>W1810053202
PDDA01000015
Gammaproteobacteria
Lelliottia amnigena LMG 2784 [PDDA]
275229
275153
-
Pro
GGG
[ENA]
¡û
>W1810147333
PIQM01000002
Gammaproteobacteria
Cedecea lapagei SLM1 [PIQM]
3177807
3177731
-
Pro
GGG
[ENA]
¡û
>W1810185318
PKFT01000001
Gammaproteobacteria
Lelliottia sp. F153 [PKFT]
290673
290597
-
Pro
GGG
[ENA]
¡û
>W1810185414
PKFU01000006
Gammaproteobacteria
Lelliottia sp. F159 [PKFU]
49964
50040
+
Pro
GGG
[ENA]
¡û
>W1810185493
PKFV01000006
Gammaproteobacteria
Lelliottia sp. F154 [PKFV]
49964
50040
+
Pro
GGG
[ENA]
¡û
>W1810266251
PQVR01000008
Gammaproteobacteria
Lelliottia aquatilis Jul-27 [PQVR]
62850
62926
+
Pro
GGG
[ENA]
¡û
>W1810266330
PQVS01000009
Gammaproteobacteria
Lelliottia sp. 7254-16 [PQVS]
146602
146678
+
Pro
GGG
[ENA]
¡û
>W1810266399
PQVT01000007
Gammaproteobacteria
Lelliottia aquatilis 6334-17 [PQVT]
62869
62945
+
Pro
GGG
[ENA]
¡û
>W1810266475
PQVU01000004
Gammaproteobacteria
Lelliottia aquatilis 6333-17 [PQVU]
146730
146806
+
Pro
GGG
[ENA]
¡û
>W1810266566
PQVV01000009
Gammaproteobacteria
Lelliottia aquatilis 6332-17 [PQVV]
146730
146806
+
Pro
GGG
[ENA]
¡û
>W1810368418
PVZP01000012
Gammaproteobacteria
Enterobacter sp. FS01 [PVZP]
94527
94603
+
Pro
GGG
[ENA]
¡û
>W1810475871
QAJT01000001
Gammaproteobacteria
Klebsiella huaxiensis WCHKl090001 [QAJT]
222326
222250
-
Pro
GGG
[ENA]
¡û
>W1810658313
QJJG01000001
Gammaproteobacteria
Klebsiella oxytoca 67 [QJJG]
360956
360880
-
Pro
GGG
[ENA]
¡û
>W1810676675
QKME01000002
Gammaproteobacteria
Scandinavium goeteborgense YR018 [QKME]
314156
314080
-
Pro
GGG
[ENA]
¡û
>C151057771
CP009706
Gammaproteobacteria
Hafnia alvei FB1 [CP009706]
3041243
3041319
+
Pro
GGG
[Ensembl]
¡û
>WENV11100653
AEWW01004558
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
2830
2906
+
Pro
GGG
[ENA]
¡û
>WENV11101490
AGFS01038101
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
61
137
+
Pro
GGG
[ENA]
¡û
>W1511205188
JMSO01000066
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [JMSO]
62220
62144
-
Pro
GGG
[ENA]
¡û
>W1511399517
JTET01000005
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
99992
100068
+
Pro
GGG
[ENA]
¡û
>W1511481590
JWJV01000016
Gammaproteobacteria
Leclercia adecarboxylata KY2 [JWJV]
121801
121725
-
Pro
GGG
[ENA]
¡û
>W1511586392
LAZF01000029
Gammaproteobacteria
Obesumbacterium proteus LE8 [LAZF]
31471
31547
+
Pro
GGG
[ENA]
¡û
>W1511698597
LGHZ01000038
Gammaproteobacteria
Kluyvera genomosp. 1 L2 [LGHZ]
47778
47702
-
Pro
GGG
[ENA]
¡û
>C161074189
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
3732197
3732273
+
Pro
GGG
-
¡û
>C161086861
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
3185804
3185728
-
Pro
GGG
-
¡û
>W1610062413
BCNN01000005
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
122743
122819
+
Pro
GGG
[ENA]
¡û
>W1610070702
BCTM01000001
Gammaproteobacteria
Kluyvera cryocrescens NBRC 102467 [BCTM]
391028
391104
+
Pro
GGG
[ENA]
¡û
>W1610070774
BCTN01000001
Gammaproteobacteria
Erwinia persicina NBRC 102418 [BCTN]
482196
482272
+
Pro
GGG
[ENA]
¡û
>W1610575661
LAGP01000023
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
2650
2574
-
Pro
GGG
[ENA]
¡û
>W1610575717
LAGQ01000034
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
36630
36554
-
Pro
GGG
[ENA]
¡û
>W1610733938
LMLK01000003
Gammaproteobacteria
Erwinia sp. Leaf53 [LMLK]
408336
408412
+
Pro
GGG
[ENA]
¡û
>W1610994318
LXEO01000025
Gammaproteobacteria
Buttiauxella noackiae ATCC 51607 [LXEO]
191366
191442
+
Pro
GGG
[ENA]
¡û
>W1610994375
LXEP01000007
Gammaproteobacteria
Buttiauxella gaviniae ATCC 51604 [LXEP]
51521
51597
+
Pro
GGG
[ENA]
¡û
>W1610994534
LXER01000020
Gammaproteobacteria
Buttiauxella brennerae ATCC 51605 [LXER]
86292
86368
+
Pro
GGG
[ENA]
¡û
>W1610994984
LXEX01000049
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
2194
2118
-
Pro
GGG
[ENA]
¡û
>W1710059954
BCNN01000005
Gammaproteobacteria
Lelliottia amnigena NBRC 105700 [BCNN]
122743
122819
+
Pro
GGG
[ENA]
¡û
>W1710068024
BCTM01000001
Gammaproteobacteria
Kluyvera cryocrescens NBRC 102467 [BCTM]
391028
391104
+
Pro
GGG
[ENA]
¡û
>W1710068096
BCTN01000001
Gammaproteobacteria
Erwinia persicina NBRC 102418 [BCTN]
482196
482272
+
Pro
GGG
[ENA]
¡û
>W1710693925
LAGP01000023
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGP]
2650
2574
-
Pro
GGG
[ENA]
¡û
>W1710693981
LAGQ01000034
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [LAGQ]
36630
36554
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK