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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173321 (110 seq.)
>W1710777273
LJBJ02000006
Actinomycetota
Rothia kristinae [LJBJ]
31834
31910
+
Met
CAT
[ENA]
¡û
>W1710899476
LNIZ01000003
Actinomycetota
Trueperella bernardiae [LNIZ]
284241
284317
+
Met
CAT
[ENA]
¡û
>W1710996512
LQBM01000003
Actinomycetota
Nesterenkonia jeotgali [LQBM]
316690
316766
+
Met
CAT
[ENA]
¡û
>W1711107914
LTTG01000023
Actinomycetota
Rothia sp. HMSC065D02 [LTTG]
83213
83287
+
Met
CAT
[ENA]
¡û
>W1711169840
LVZK01000002
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
54380
54306
-
Met
CAT
[ENA]
¡û
>W1711178716
LWGZ01000462
Actinomycetota
Rothia kristinae [LWGZ]
2919
2995
+
Met
CAT
[ENA]
¡û
>W1711184937
LWMY01000026
Actinomycetota
Trueperella sp. HMSC08H06 [LWMY]
931
1007
+
Met
CAT
[ENA]
¡û
>W1711185090
LWNB01000052
Actinomycetota
Trueperella sp. HMSC08B05 [LWNB]
26051
25975
-
Met
CAT
[ENA]
¡û
>W1711224133
LXTU01000054
Actinomycetota
Rothia sp. ND6WE1A [LXTU]
9020
8944
-
Met
CAT
[ENA]
¡û
>W1711372168
MDSS02000032
Actinomycetota
Nesterenkonia sp. PF2B19 [MDSS]
36747
36823
+
Met
CAT
[ENA]
¡û
>W1711589192
MODZ01000003
Actinomycetota
Rothia kristinae [MODZ]
97088
97164
+
Met
CAT
[ENA]
¡û
>W1711772095
MVGS01000103
Actinomycetota
Trueperella pyogenes [MVGS]
5107
5181
+
Met
CAT
[ENA]
¡û
>W131218334
ATXP01000001
Actinomycetota
Nesterenkonia alba DSM 19423 [ATXP]
202014
202090
+
Met
CAT
[ENA]
¡û
>W131087247
AOCK01000002
Actinomycetota
Paeniglutamicibacter gangotriensis Lz1y [AOCK]
193011
193087
+
Met
CAT
[ENA]
¡û
>W131087248
AOCK01000002
Actinomycetota
Paeniglutamicibacter gangotriensis Lz1y [AOCK]
193401
193477
+
Met
CAT
[ENA]
¡û
>W131087261
AOCK01000004
Actinomycetota
Paeniglutamicibacter gangotriensis Lz1y [AOCK]
160863
160939
+
Met
CAT
[ENA]
¡û
>C171057878
CP017150
Actinomycetota
Brevibacterium aurantiacum SMQ-1335 [CP017150]
1848119
1848045
-
Met
CAT
-
¡û
>w005562
AAGP01000024
Actinomycetota
Brevibacterium aurantiacum BL2 [AAGP]
813
889
+
Met
CAT
[ENA]
¡û
>WENV180749794
ODHS01000026
[ODHS] human metagenome; G_DNA_Supragingival plaque
8736
8662
-
fMet
CAT
[ENA]
¢þ
>WENV180933308
ODTR01000021
[ODTR] human metagenome; G_DNA_Supragingival plaque
108056
108130
+
fMet
CAT
[ENA]
¢þ
>WENV180972857
ODUW01000348
[ODUW] human metagenome; G_DNA_Supragingival plaque
25550
25624
+
fMet
CAT
[ENA]
¢þ
>W141284204
JALQ01000117
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
979
905
-
Met
CAT
[ENA]
¡û
>WENV183508614
OMHE01004808
[OMHE] human oral metagenome; human oral
664
738
+
fMet
CAT
[ENA]
¢þ
>W141426482
JEMO01000002
Actinomycetota
Nesterenkonia sp. AN1 [JEMO]
49666
49742
+
Met
CAT
[ENA]
¡û
>C181168809
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
2296885
2296959
+
Met
CAT
-
¡û
>C191031881
CP025330
Actinomycetota
Brevibacterium aurantiacum SMQ-1417 [CP025330]
1983534
1983460
-
Met
CAT
-
¡û
>C191031929
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
1859109
1859035
-
Met
CAT
-
¡û
>C191031977
CP025332
Actinomycetota
Brevibacterium aurantiacum SMQ-1421 [CP025332]
1770012
1769938
-
Met
CAT
-
¡û
>C191032024
CP025333
Actinomycetota
Brevibacterium aurantiacum SMQ-1419 [CP025333]
1803231
1803157
-
Met
CAT
-
¡û
>C191032072
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
1939007
1938933
-
Met
CAT
-
¡û
>C191114686
CP033902
Actinomycetota
Trueperella pyogenes TP1 [CP033902]
284558
284632
+
Met
CAT
-
¡û
>C191114809
CP033904
Actinomycetota
Trueperella pyogenes TP3 [CP033904]
1178135
1178061
-
Met
CAT
-
¡û
>C191125299
CP034438
Actinomycetota
Flaviflexus salsibiostraticola KCTC 33148 [CP034438]
1252774
1252698
-
Met
CAT
-
¡û
>C191128000
CP034593
Actinomycetota
Flaviflexus ciconiae H23T48 [CP034593]
1533685
1533609
-
Met
CAT
-
¡û
>W141531771
JHEL01000015
Actinomycetota
Curtobacterium sp. S6 [JHEL]
785623
785547
-
Met
CAT
[ENA]
¡û
>C191165947
CP039429
Actinomycetota
Citricoccus sp. SGAir0453 [CP039429]
1231481
1231557
+
Met
CAT
-
¡û
>C191165980
CP039429
Actinomycetota
Citricoccus sp. SGAir0453 [CP039429]
1924206
1924130
-
Met
CAT
-
¡û
>C191211525
LR134476
Actinomycetota
Trueperella bialowiezensis NCTC13354 [LR134476]
1667804
1667878
+
Met
CAT
-
¡û
>W141563803
JIAG01000006
Actinomycetota
Haematomicrobium sanguinis DSM 21259 [JIAG]
80747
80823
+
Met
CAT
[ENA]
¡û
>W09134734
ACUY01000058
Actinomycetota
Actinomyces sp. oral taxon 848 oral taxon 848 str. F0332 [ACUY]
7451
7377
-
Met
CAT
[ENA]
¡û
>W1910181650
BJME01000020
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
87836
87762
-
Met
CAT
[ENA]
¡û
>W1910334021
FSNK01000007
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 133 [FSNK]
236156
236080
-
Met
CAT
[ENA]
¡û
>W1910334100
FSNK01000096
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 133 [FSNK]
7714
7788
+
Met
CAT
[ENA]
¡û
>W1910373985
FUHW01000038
Actinomycetota
Arthrobacter rhombi B Ar 00.02 [FUHW]
203358
203432
+
Met
CAT
[ENA]
¡û
>W1910373986
FUHW01000038
Actinomycetota
Arthrobacter rhombi B Ar 00.02 [FUHW]
205772
205846
+
Met
CAT
[ENA]
¡û
>W1910442284
FWFC01000005
Actinomycetota
Kocuria massiliensis Marseille-P3598 [FWFC]
67134
67208
+
Met
CAT
[ENA]
¡û
>W1910500113
FXYZ01000030
Actinomycetota
Brevibacterium aurantiacum [FXYZ]
277
203
-
Met
CAT
[ENA]
¡û
>W1910500189
FXZB01000012
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
591
517
-
Met
CAT
[ENA]
¡û
>W1910500409
FXZG01000003
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
129570
129644
+
Met
CAT
[ENA]
¡û
>W1910500465
FXZH01000009
Actinomycetota
Brevibacterium sp. 239c [FXZH]
65758
65832
+
Met
CAT
[ENA]
¡û
>W1910500466
FXZH01000009
Actinomycetota
Brevibacterium sp. 239c [FXZH]
67400
67474
+
Met
CAT
[ENA]
¡û
>W1910500517
FXZI01000004
Actinomycetota
Brevibacterium aurantiacum [FXZI]
80269
80343
+
Met
CAT
[ENA]
¡û
>W1911114539
NOIQ01000001
Actinomycetota
Rothia koreensis JCM 15915 [NOIQ]
325762
325836
+
Met
CAT
[ENA]
¡û
>W1911114601
NOIR01000002
Actinomycetota
Kocuria sp. 257 [NOIR]
673996
673922
-
Met
CAT
[ENA]
¡û
>W1911114630
NOIS01000001
Actinomycetota
Kocuria sp. 36 [NOIS]
585435
585509
+
Met
CAT
[ENA]
¡û
>W1911114739
NOIU01000002
Actinomycetota
Rothia halotolerans JCM 31975 [NOIU]
996843
996769
-
Met
CAT
[ENA]
¡û
>W1911114760
NOIV01000001
Actinomycetota
Rothia kristinae ATCC 27570 [NOIV]
192759
192833
+
Met
CAT
[ENA]
¡û
>W1911200078
NREL01000007
Actinomycetota
Mycobacteroides abscessus subsp. abscessus A324 [NREL]
175962
175888
-
Met
CAT
[ENA]
¡û
>W1911203140
NRGO01000013
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
65306
65380
+
Met
CAT
[ENA]
¡û
>W1911203196
NRGP01000013
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
456
382
-
Met
CAT
[ENA]
¡û
>W1911203214
NRGQ01000001
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
164
90
-
Met
CAT
[ENA]
¡û
>W1911203450
NRGU01000038
Actinomycetota
Glutamicibacter sp. BW78 [NRGU]
494726
494800
+
Met
CAT
[ENA]
¡û
>W1911203451
NRGU01000038
Actinomycetota
Glutamicibacter sp. BW78 [NRGU]
497140
497214
+
Met
CAT
[ENA]
¡û
>W1911203616
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
3656396
3656322
-
Met
CAT
[ENA]
¡û
>W1911203828
NRHA01000037
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
316
242
-
Met
CAT
[ENA]
¡û
>W1911203832
NRHB01000001
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
232796
232870
+
Met
CAT
[ENA]
¡û
>W1911532918
OIWY01000006
Actinomycetota
Brachybacterium timonense Marseille-P4339 [OIWY]
753095
753021
-
Met
CAT
[ENA]
¡û
>W1911567791
PCPV01000007
Actinomycetota
Arthrobacter sp. MYb222 [PCPV]
694
620
-
Met
CAT
[ENA]
¡û
>W1911568027
PCPZ01000001
Actinomycetota
Arthrobacter sp. MYb214 [PCPZ]
987990
987916
-
Met
CAT
[ENA]
¡û
>W1911752166
QWLD01000001
Actinomycetota
Nesterenkonia muleiensis RB2 [QWLD]
39766
39840
+
Met
CAT
[ENA]
¡û
>W1911810697
QYZP01000002
Actinomycetota
Nesterenkonia natronophila M8 [QYZP]
306848
306922
+
Met
CAT
[ENA]
¡û
>W1810187914
PKHY01000002
Actinomycetota
Trueperella bernardiae UMB0116 [PKHY]
426265
426339
+
Met
CAT
[ENA]
¡û
>W1810365274
PVTY01000012
Actinomycetota
Nesterenkonia sandarakina CG 35 [PVTY]
103279
103205
-
Met
CAT
[ENA]
¡û
>W1810484112
QASM01000012
Actinomycetota
Trueperella pyogenes SH01 [QASM]
37067
36993
-
Met
CAT
[ENA]
¡û
>W1810756553
QPGC01000034
Actinomycetota
Brevibacterium aurantiacum 862_7 [QPGC]
152165
152239
+
Met
CAT
[ENA]
¡û
>W1810756583
QPGD01000006
Actinomycetota
Brevibacterium aurantiacum 876_7 [QPGD]
137255
137329
+
Met
CAT
[ENA]
¡û
>W1810756639
QPGE01000006
Actinomycetota
Brevibacterium aurantiacum 908_7 [QPGE]
329871
329797
-
Met
CAT
[ENA]
¡û
>W1810788313
QREH01000001
Actinomycetota
Citricoccus muralis DSM 14442 [QREH]
1483288
1483214
-
Met
CAT
[ENA]
¡û
>C151015785
CP007003
Actinomycetota
Trueperella pyogenes TP8 [CP007003]
1638063
1637989
-
Met
CAT
[Ensembl]
¡û
>C151026362
CP007519
Actinomycetota
Trueperella pyogenes TP6375 [CP007519]
2296992
2297066
+
Met
CAT
[Ensembl]
¡û
>C151096890
CP012649
Actinomycetota
Trueperella pyogenes 2012CQ-ZSH [CP012649]
37279
37205
-
Met
CAT
-
¡û
>W1510544489
CSSZ01000008
Actinomycetota
Flaviflexus massiliensis SIT4 [CSSZ]
41879
41803
-
Met
CAT
[ENA]
¡û
>W1511351065
JRMX01000007
Actinomycetota
Arcanobacterium sp. S3PF19 [JRMX]
19066
18992
-
Met
CAT
[ENA]
¡û
>W1511460832
JVLW01000014
Actinomycetota
Rothia dentocariosa 316_RDEN [JVLW]
80667
80741
+
Met
CAT
[ENA]
¡û
>W11172406
AFRW01000103
Actinomycetota
Nesterenkonia sp. F [AFRW]
25688
25764
+
Met
CAT
[ENA]
¡û
>W11176761
AFXQ01000013
Actinomycetota
Citricoccus sp. CH26A [AFXQ]
9293
9369
+
Met
CAT
[ENA]
¡û
>W11176763
AFXQ01000015
Actinomycetota
Citricoccus sp. CH26A [AFXQ]
38723
38647
-
Met
CAT
[ENA]
¡û
>W1610069430
BCSM01000001
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
213957
213881
-
Met
CAT
[ENA]
¡û
>W1610590101
LDRD01000096
Actinomycetota
Rothia kristinae [LDRD]
6694
6770
+
Met
CAT
[ENA]
¡û
>W1610590146
LDRE01000137
Actinomycetota
Rothia kristinae [LDRE]
1158
1082
-
Met
CAT
[ENA]
¡û
>W1610590184
LDRF01000098
Actinomycetota
Rothia kristinae [LDRF]
15624
15700
+
Met
CAT
[ENA]
¡û
>W1610590202
LDRG01000023
Actinomycetota
Rothia kristinae [LDRG]
216
140
-
Met
CAT
[ENA]
¡û
>W1610590262
LDRH01000105
Actinomycetota
Rothia kristinae [LDRH]
496
420
-
Met
CAT
[ENA]
¡û
>W1610590281
LDRI01000013
Actinomycetota
Rothia kristinae [LDRI]
49934
50010
+
Met
CAT
[ENA]
¡û
>W1610590354
LDRJ01000138
Actinomycetota
Rothia kristinae [LDRJ]
21246
21322
+
Met
CAT
[ENA]
¡û
>W1610641459
LJBJ02000006
Actinomycetota
Rothia kristinae [LJBJ]
31834
31910
+
Met
CAT
[ENA]
¡û
>W1610759879
LNIZ01000003
Actinomycetota
Trueperella bernardiae [LNIZ]
284241
284317
+
Met
CAT
[ENA]
¡û
>W1610851169
LQBM01000003
Actinomycetota
Nesterenkonia jeotgali [LQBM]
316690
316766
+
Met
CAT
[ENA]
¡û
>W1610979037
LVZK01000002
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
54380
54306
-
Met
CAT
[ENA]
¡û
>W1610986763
LWGZ01000462
Actinomycetota
Rothia kristinae [LWGZ]
2919
2995
+
Met
CAT
[ENA]
¡û
>W1611008504
LXTU01000054
Actinomycetota
Rothia sp. ND6WE1A [LXTU]
9020
8944
-
Met
CAT
[ENA]
¡û
>W1710066803
BCSM01000001
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
213957
213881
-
Met
CAT
[ENA]
¡û
>W1710709381
LDRD01000096
Actinomycetota
Rothia kristinae [LDRD]
6694
6770
+
Met
CAT
[ENA]
¡û
>W1710709426
LDRE01000137
Actinomycetota
Rothia kristinae [LDRE]
1158
1082
-
Met
CAT
[ENA]
¡û
>W1710709464
LDRF01000098
Actinomycetota
Rothia kristinae [LDRF]
15624
15700
+
Met
CAT
[ENA]
¡û
>W1710709482
LDRG01000023
Actinomycetota
Rothia kristinae [LDRG]
216
140
-
Met
CAT
[ENA]
¡û
>W1710709542
LDRH01000105
Actinomycetota
Rothia kristinae [LDRH]
496
420
-
Met
CAT
[ENA]
¡û
>W1710709561
LDRI01000013
Actinomycetota
Rothia kristinae [LDRI]
49934
50010
+
Met
CAT
[ENA]
¡û
>W1710709634
LDRJ01000138
Actinomycetota
Rothia kristinae [LDRJ]
21246
21322
+
Met
CAT
[ENA]
¡û
>W1710743615
LGYI01000002
Actinomycetota
Trueperella bernardiae [LGYI]
387321
387397
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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