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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173325 (92 seq.)
>A171003596
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
2307873
2307797
-
Lys
TTT
-
¡û
>A171004512
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
1245108
1245184
+
Lys
TTT
-
¡û
>A171004597
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
2827515
2827439
-
Lys
TTT
-
¡û
>A171004631
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
3547250
3547326
+
Lys
TTT
-
¡û
>A171004687
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
2678530
2678454
-
Lys
TTT
-
¡û
>A171004773
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
1180476
1180552
+
Lys
TTT
-
¡û
>A171004826
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
1142698
1142774
+
Lys
TTT
-
¡û
>A171004879
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
1304888
1304964
+
Lys
TTT
-
¡û
>A171004943
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
2994648
2994724
+
Lys
TTT
-
¡û
>A171004993
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
2956652
2956728
+
Lys
TTT
-
¡û
>A171005045
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
3025927
3026003
+
Lys
TTT
-
¡û
>A171005107
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
3342970
3342894
-
Lys
TTT
-
¡û
>A171005168
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
2479869
2479793
-
Lys
TTT
-
¡û
>A171005198
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
956262
956338
+
Lys
TTT
-
¡û
>A171005283
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
1209923
1209847
-
Lys
TTT
-
¡û
>A171005305
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
1903197
1903271
+
Lys
TTT
-
¡û
>A171005429
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
3086896
3086820
-
Lys
TTT
-
¡û
>A171005485
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
3133108
3133032
-
Lys
TTT
-
¡û
>WENV180345963
OBLN01015277
[OBLN] sediment metagenome; sediment
1625
1549
-
Lys
TTT
[ENA]
¢þ
>WENV170008237
AMZC01005453
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1222
1146
-
Lys
TTT
[ENA]
¢þ
>At1413
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
1509797
1509721
-
Lys
TTT
[Ensembl]
¡û
>At1547
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
2702960
2702884
-
Lys
TTT
[Ensembl]
¡û
>WENV170669228
LAHR01049898
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
27
103
+
Lys
TTT
[ENA]
¢þ
>WENV170686130
LFRM01127944
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
37908
37832
-
Lys
TTT
[ENA]
¢þ
>WENV170723576
LSQX01273894
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1814
1890
+
Lys
TTT
[ENA]
¢þ
>WENV170723998
LSQX01288774
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
915
991
+
Lys
TTT
[ENA]
¢þ
>WENV170784204
MCHG01000114
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
606
682
+
Lys
TTT
[ENA]
¢þ
>W1910569270
JJOR01000186
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
33366
33290
-
Lys
TTT
[ENA]
¡û
>W1910569315
JJOS01000109
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
33395
33319
-
Lys
TTT
[ENA]
¡û
>W1910569375
JJOT01000128
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
35054
34978
-
Lys
TTT
[ENA]
¡û
>W1910569416
JJOU01000175
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
23952
23876
-
Lys
TTT
[ENA]
¡û
>W1910569446
JJOV01000056
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
75330
75254
-
Lys
TTT
[ENA]
¡û
>W1910569482
JJOW01000085
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
603
679
+
Lys
TTT
[ENA]
¡û
>W1910569570
JJOX01000080
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
35872
35796
-
Lys
TTT
[ENA]
¡û
>W1910569608
JJOY01000034
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
611
687
+
Lys
TTT
[ENA]
¡û
>W1910569650
JJOZ01000026
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
35872
35796
-
Lys
TTT
[ENA]
¡û
>W1910569701
JJPA01000107
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
34977
34901
-
Lys
TTT
[ENA]
¡û
>W1910569783
JJPB01000141
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
34208
34132
-
Lys
TTT
[ENA]
¡û
>W1910569785
JJPC01000008
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
1905
1981
+
Lys
TTT
[ENA]
¡û
>W1910569866
JJPD01000149
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
23871
23795
-
Lys
TTT
[ENA]
¡û
>W1910569907
JJPE01000065
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
23915
23839
-
Lys
TTT
[ENA]
¡û
>W1910569975
JJPF01000104
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
23916
23840
-
Lys
TTT
[ENA]
¡û
>W1910570011
JJPG01000059
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
23915
23839
-
Lys
TTT
[ENA]
¡û
>W1910570045
JJPH01000019
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
129624
129548
-
Lys
TTT
[ENA]
¡û
>W1910570140
JJPI01000144
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
1907
1983
+
Lys
TTT
[ENA]
¡û
>W1910570173
JJPJ01000061
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
52376
52300
-
Lys
TTT
[ENA]
¡û
>W1910570206
JJPK01000018
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
33354
33278
-
Lys
TTT
[ENA]
¡û
>W1910570267
JJPL01000107
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
108251
108175
-
Lys
TTT
[ENA]
¡û
>W1910570320
JJPM01000179
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
14557
14481
-
Lys
TTT
[ENA]
¡û
>W1910570377
JJPN01000118
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
33383
33307
-
Lys
TTT
[ENA]
¡û
>W1910570429
JJPO01000128
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
33421
33345
-
Lys
TTT
[ENA]
¡û
>W1910570459
JJPP01000037
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
221978
221902
-
Lys
TTT
[ENA]
¡û
>W1910570499
JJPQ01000006
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
40593
40517
-
Lys
TTT
[ENA]
¡û
>W1910570548
JJPR01000007
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
35052
34976
-
Lys
TTT
[ENA]
¡û
>W1910570629
JJPS01000153
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
7846
7770
-
Lys
TTT
[ENA]
¡û
>W1910570651
JJPT01000019
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
33414
33338
-
Lys
TTT
[ENA]
¡û
>W1910570776
JJPV01000058
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
52376
52300
-
Lys
TTT
[ENA]
¡û
>W1910570827
JJPW01000052
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
52376
52300
-
Lys
TTT
[ENA]
¡û
>W1910570854
JJPX01000019
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
33389
33313
-
Lys
TTT
[ENA]
¡û
>W1910570912
JJPY01000032
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
72990
72914
-
Lys
TTT
[ENA]
¡û
>W1910570970
JJPZ01000042
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
106901
106825
-
Lys
TTT
[ENA]
¡û
>W1910571017
JJQA01000074
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
1897
1973
+
Lys
TTT
[ENA]
¡û
>W1910571075
JJQB01000078
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
1887
1963
+
Lys
TTT
[ENA]
¡û
>W1910571142
JJQC01000145
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
33820
33744
-
Lys
TTT
[ENA]
¡û
>W1910571179
JJQD01000119
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
23678
23602
-
Lys
TTT
[ENA]
¡û
>W1910571222
JJQE01000091
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
23916
23840
-
Lys
TTT
[ENA]
¡û
>W1910571305
JJQG01000010
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
33446
33370
-
Lys
TTT
[ENA]
¡û
>W1910571356
JJQH01000001
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
35054
34978
-
Lys
TTT
[ENA]
¡û
>W1910571413
JJQI01000008
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
124549
124473
-
Lys
TTT
[ENA]
¡û
>W1910571479
JJQJ01000129
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
35054
34978
-
Lys
TTT
[ENA]
¡û
>W1910571526
JJQK01000065
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
14537
14461
-
Lys
TTT
[ENA]
¡û
>W1910571577
JJQL01000021
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
4521
4597
+
Lys
TTT
[ENA]
¡û
>W1910571659
JJQM01000110
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
33422
33346
-
Lys
TTT
[ENA]
¡û
>W1910571719
JJQN01000120
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
59287
59211
-
Lys
TTT
[ENA]
¡û
>W1910571742
JJQO01000005
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
35222
35146
-
Lys
TTT
[ENA]
¡û
>W1910571842
JJQP01000293
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
33437
33361
-
Lys
TTT
[ENA]
¡û
>W1910571888
JJQQ01000159
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
35049
34973
-
Lys
TTT
[ENA]
¡û
>W1910571924
JJQR01000076
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
33445
33369
-
Lys
TTT
[ENA]
¡û
>W1910571968
JJQS01000050
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
116391
116315
-
Lys
TTT
[ENA]
¡û
>W1910572026
JJQT01000122
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
23647
23571
-
Lys
TTT
[ENA]
¡û
>W1910572140
JJQV01000098
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
33443
33367
-
Lys
TTT
[ENA]
¡û
>W1910572171
JJQW01000074
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
35054
34978
-
Lys
TTT
[ENA]
¡û
>W1910572210
JJQX01000035
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
9127
9051
-
Lys
TTT
[ENA]
¡û
>W1910572256
JJQY01000035
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
1475
1551
+
Lys
TTT
[ENA]
¡û
>W1910572310
JJQZ01000063
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
35054
34978
-
Lys
TTT
[ENA]
¡û
>W1910572389
JJRA01000125
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
35124
35048
-
Lys
TTT
[ENA]
¡û
>W1910572426
JJRB01000100
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
33415
33339
-
Lys
TTT
[ENA]
¡û
>W1910575068
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
2019120
2019044
-
Lys
TTT
[ENA]
¡û
>W1910694778
MDTP02000055
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
606
682
+
Lys
TTT
[ENA]
¡û
>W1610045113
BBBC01000055
Euryarchaeota
Methanosarcina mazei JCM 9314 [BBBC]
1792
1868
+
Lys
TTT
[ENA]
¡û
>W1610605098
LFRP01000016
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
37908
37832
-
Lys
TTT
[ENA]
¡û
>W1610670268
LKAZ01000054
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
68948
69024
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK