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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173566 (28 seq.)
>W1710821470
LKTL01000007
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
35053
35129
+
Pro
GGG
[ENA]
¡û
>W1711273409
LZFV01000001
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
1013129
1013205
+
Pro
GGG
[ENA]
¡û
>W1711624549
MPHK01000002
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
55118
55194
+
Pro
GGG
[ENA]
¡û
>C171108641
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
1959017
1958941
-
Pro
GGG
-
¡û
>C020958
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
2768128
2768204
+
Pro
GGG
[Ensembl]
¡û
>w021070
AAVJ01000007
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
49234
49312
+
Pro
GGG
[ENA]
¡û
>w007662
AAIU01000009
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
45990
46068
+
Pro
GGG
[ENA]
¡û
>C08010234
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
2143350
2143277
-
Pro
GGG
[Ensembl]
¡û
>C08009860
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
3032737
3032813
+
Pro
GGG
[Ensembl]
¡û
>W141276582
JADX01000014
Gammaproteobacteria
Shewanella fidelis ATCC BAA-318 [JADX]
198352
198428
+
Pro
GGG
[ENA]
¡û
>C08010756
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
3404309
3404385
+
Pro
GGG
[Ensembl]
¡û
>WENV170024672
BCQL01095952
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
556
632
+
Pro
GGG
[ENA]
¢þ
>W1910676731
MCTV01000018
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
13958
13882
-
Pro
GGG
[ENA]
¡û
>W1910676943
MCTY01000173
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
37275
37351
+
Pro
GGG
[ENA]
¡û
>W1910677481
MCUF01000038
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
40061
39985
-
Pro
GGG
[ENA]
¡û
>W1910679521
MCVG01000134
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
14336
14260
-
Pro
GGG
[ENA]
¡û
>W1910679664
MCVI01000020
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
14559
14483
-
Pro
GGG
[ENA]
¡û
>C09109857
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
2363681
2363605
-
Pro
GGG
[Ensembl]
¡û
>W1911710094
QPQU01000004
Gammaproteobacteria
Shewanella japonica KCTC 12235 [QPQU]
275812
275888
+
Pro
GGG
[ENA]
¡û
>W1810005574
BFBQ01000002
Gammaproteobacteria
Shewanella halifaxensis 6JANF4-E-4 [BFBQ]
1492875
1492951
+
Pro
GGG
[ENA]
¡û
>W1810155944
PJAZ01000063
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
26705
26629
-
Pro
GGG
[ENA]
¡û
>W1810156303
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
1046861
1046785
-
Pro
GGG
[ENA]
¡û
>W1810156673
PJBL01000012
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
55758
55834
+
Pro
GGG
[ENA]
¡û
>W1810156785
PJBM01000255
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
30579
30655
+
Pro
GGG
[ENA]
¡û
>W1610460577
FKJK01000003
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
145131
145055
-
Pro
GGG
[ENA]
¡û
>W1610685432
LKTL01000007
Gammaproteobacteria
Shewanella sp. P1-14-1 [LKTL]
35053
35129
+
Pro
GGG
[ENA]
¡û
>W1611032758
LZFV01000001
Gammaproteobacteria
Shewanella sp. UCD-FRSSP16_17 [LZFV]
1013129
1013205
+
Pro
GGG
[ENA]
¡û
>W1710460141
FKJK01000003
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
145131
145055
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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