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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173775 (37 seq.)
>W1711360575
MDJS01000003
Bacteroidota
Mucilaginibacter sp. PPCGB 2223 [MDJS]
305417
305491
+
His
GTG
[ENA]
¡û
>W141222971
BACV01001042
Bacteroidota
Cytophagales bacterium B6 B6 [BACV]
14091
14015
-
His
GTG
[ENA]
¡û
>WENV183726614
PJTO01000032
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
64449
64523
+
His
GTG
[ENA]
¢þ
>WENV183728409
PJTQ01000044
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
64449
64523
+
His
GTG
[ENA]
¢þ
>WENV183729685
PJTR01000016
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
272562
272636
+
His
GTG
[ENA]
¢þ
>WENV183730893
PJTS01001845
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
2962
3036
+
His
GTG
[ENA]
¢þ
>WENV183731575
PJTT01000031
[PJTT] soil metagenome; Soil (2) enriched on wood chips
272562
272636
+
His
GTG
[ENA]
¢þ
>WENV183736282
PJUC01000388
[PJUC] soil metagenome; Soil enriched on filter paper
490
416
-
His
GTG
[ENA]
¢þ
>WENV183739837
PJUF01000027
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
64449
64523
+
His
GTG
[ENA]
¢þ
>WENV183740089
PJUF01000307
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
490
416
-
His
GTG
[ENA]
¢þ
>C181225970
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
2890345
2890419
+
His
GTG
-
¡û
>C191096561
CP032869
Bacteroidota
Mucilaginibacter celer HYN0043 [CP032869]
3872717
3872643
-
His
GTG
-
¡û
>C191157550
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
2470594
2470520
-
His
GTG
-
¡û
>C191158046
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
3133465
3133391
-
His
GTG
-
¡û
>C191221575
LR590470
Bacteroidota
Sphingobacterium daejeonense NCTC13534 [LR590470]
1292979
1292905
-
His
GTG
-
¡û
>W1910377941
FUKU01000059
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
38786
38860
+
His
GTG
[ENA]
¡û
>W1911136238
NOUX01000014
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
61018
61092
+
His
GTG
[ENA]
¡û
>W1911136280
NOUY01000034
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
22677
22751
+
His
GTG
[ENA]
¡û
>W1911219796
NRSW01000001
Bacteroidota
Mucilaginibacter sp. MD40 [NRSW]
2657245
2657319
+
His
GTG
[ENA]
¡û
>W1810069028
PEAZ01000045
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
49590
49664
+
His
GTG
[ENA]
¡û
>W1810069068
PEBA01000010
Bacteroidota
Sphingobacterium sp. 1.A.5 [PEBA]
79107
79181
+
His
GTG
[ENA]
¡û
>W1810477224
QAOQ01000004
Bacteroidota
Mucilaginibacter yixingensis DSM 26809 [QAOQ]
390367
390441
+
His
GTG
[ENA]
¡û
>W1810477225
QAOQ01000004
Bacteroidota
Mucilaginibacter yixingensis DSM 26809 [QAOQ]
400747
400821
+
His
GTG
[ENA]
¡û
>W1810584243
QEYR01000056
Bacteroidota
Mucilaginibacter rubeus P1 [QEYR]
32381
32455
+
His
GTG
[ENA]
¡û
>W1810587268
QFKU01000034
Bacteroidota
Mucilaginibacter kameinonensis P4 [QFKU]
31263
31337
+
His
GTG
[ENA]
¡û
>W1810587311
QFKV01000036
Bacteroidota
Mucilaginibacter rubeus P3 [QFKV]
120167
120093
-
His
GTG
[ENA]
¡û
>W1810587358
QFKW01000060
Bacteroidota
Mucilaginibacter rubeus P2 [QFKW]
32381
32455
+
His
GTG
[ENA]
¡û
>W1810597092
QGHA01000001
Bacteroidota
Mucilaginibacter oryzae DSM 19975 [QGHA]
100580
100505
-
His
GTG
[ENA]
¡û
>W1810753619
QPCG01000006
Bacteroidota
Mucilaginibacter endophyticus RS1 [QPCG]
340304
340230
-
His
GTG
[ENA]
¡û
>W1511108298
JJMU01000002
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
156064
155990
-
His
GTG
[ENA]
¡û
>W1610867544
LQXS01000002
Bacteroidota
Sphingobacterium sp. CFCC 11742 [LQXS]
521990
521915
-
His
GTG
[ENA]
¡û
>W1710505659
FMTV01000007
Bacteroidota
Mucilaginibacter sp. NFR10 [FMTV]
103495
103421
-
His
GTG
[ENA]
¡û
>W1710516025
FNCG01000018
Bacteroidota
Mucilaginibacter gossypii [FNCG]
64540
64466
-
His
GTG
[ENA]
¡û
>W1710521441
FNGK01000001
Bacteroidota
Sphingobacterium mizutaii [FNGK]
1610096
1610170
+
His
GTG
[ENA]
¡û
>W1710538704
FNUT01000010
Bacteroidota
Sphingobacterium lactis [FNUT]
82292
82368
+
His
GTG
[ENA]
¡û
>W1710546827
FOCL01000007
Bacteroidota
Mucilaginibacter gossypiicola [FOCL]
59340
59414
+
His
GTG
[ENA]
¡û
>W1710608328
FXAU01000001
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
958571
958647
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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