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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174002 (11 seq.)
>C171030732
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
3566656
3566730
+
Met
CAT
-
¡û
>C171037545
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
6238253
6238177
-
Met
CAT
-
¡û
>C171104423
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
415107
415181
+
Met
CAT
-
¡û
>C181113134
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
5753248
5753174
-
Met
CAT
-
¡û
>W09109905
ABUR01000002
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
137759
137683
-
Met
CAT
[ENA]
¡û
>SRA1014263
SRR023845.65739
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
246
170
-
Met
CAT
[SRA]
>SRA1014278
SRR023845.68784
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
246
170
-
Met
CAT
[SRA]
>SRA1014901
SRR023845.373227
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
103
26
-
Met
CAT
[SRA]
>SRA1015060
SRR023845.445178
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
246
170
-
Met
CAT
[SRA]
>SRA1015160
SRR023845.481770
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
246
170
-
Met
CAT
[SRA]
>C10111776
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
7875147
7875071
-
Met
CAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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