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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174404 (19 seq.)
>WENV180042838
LQAG01003846
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
940
864
-
Trp
CCA
[ENA]
¢þ
>WENV180043538
LQAI01000466
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
5418
5342
-
Trp
CCA
[ENA]
¢þ
>WENV180044042
LQAJ01000590
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
1630
1706
+
Trp
CCA
[ENA]
¢þ
>WENV183705322
PDWI01001379
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
33964
33888
-
Trp
CCA
[ENA]
¢þ
>WENV183721499
PDWJ01072587
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1460
1384
-
Trp
CCA
[ENA]
¢þ
>WENV183747564
PPCM01005275
[PPCM] marine sediment metagenome; marine sediment
1863
1787
-
Trp
CCA
[ENA]
¢þ
>WENV170419479
CEUM01129283
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
14401
14477
+
Trp
CCA
[ENA]
¢þ
>WENV170438205
CEUU01106930
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1365
1289
-
Trp
CCA
[ENA]
¢þ
>WENV170439040
CEUV01009454
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4456
4380
-
Trp
CCA
[ENA]
¢þ
>WENV170901925
MDTD01177896
[MDTD] marine metagenome; seawater
8665
8741
+
Trp
CCA
[ENA]
¢þ
>C181226990
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
4102060
4102136
+
Trp
CCA
-
¡û
>W1911737989
QTZO01000001
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
119637
119713
+
Trp
CCA
[ENA]
¡û
>W10111366
ADDI01000004
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
32500
32424
-
Trp
CCA
[ENA]
¡û
>C11106868
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
2474622
2474546
-
Trp
CCA
[Ensembl]
¡û
>W11114309
ADDI01000004
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
32500
32424
-
Trp
CCA
[ENA]
¡û
>W11149147
AEUJ01000007
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
135112
135188
+
Trp
CCA
[ENA]
¡û
>C121008994
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
3783256
3783332
+
Trp
CCA
[Ensembl]
¡û
>C161068269
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
3234440
3234364
-
Trp
CCA
[Ensembl]
¡û
>C131017938
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
3578573
3578649
+
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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