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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174437 (45 seq.)
>W1710859941
LMCM01000006
Actinomycetota
Phycicoccus sp. Root101 [LMCM]
416532
416456
-
Val
CAC
[ENA]
¡û
>W1710865218
LMGM01000001
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
414672
414596
-
Val
CAC
[ENA]
¡û
>W1710880093
LMSC01000012
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
176981
177057
+
Val
CAC
[ENA]
¡û
>W1710880960
LMSS01000001
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
404289
404365
+
Val
CAC
[ENA]
¡û
>W1710881037
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
2547125
2547049
-
Val
CAC
[ENA]
¡û
>W1710996458
LQBL01000007
Actinomycetota
Serinicoccus chungangensis [LQBL]
9363
9287
-
Val
CAC
[ENA]
¡û
>W1711312330
MAST01000053
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
105746
105822
+
Val
CAC
[ENA]
¡û
>W1711491939
MKJZ01000013
Actinomycetota
Serinicoccus sp. CUA-874 [MKJZ]
6143
6067
-
Val
CAC
[ENA]
¡û
>W1711492041
MKKB01000324
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
10
86
+
Val
CAC
[ENA]
¡û
>W1711492245
MKKF01000050
Actinomycetota
Serinicoccus sp. CNJ-927 [MKKF]
20588
20664
+
Val
CAC
[ENA]
¡û
>C171034691
CP014989
Actinomycetota
Serinicoccus hydrothermalis JLT9 [CP014989]
501557
501481
-
Val
CAC
-
¡û
>W131217031
ATWJ01000009
Actinomycetota
Ornithinimicrobium pekingense DSM 21552 [ATWJ]
15480
15406
-
Val
CAC
[ENA]
¡û
>W131217150
ATWM01000002
Actinomycetota
Serinicoccus marinus DSM 15273 [ATWM]
181995
182071
+
Val
CAC
[ENA]
¡û
>W131227555
AUFG01000004
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
172301
172377
+
Val
CAC
[ENA]
¡û
>WENV181188755
OEOE01344067
[OEOE] activated sludge metagenome; Activated Sludge
96
171
+
Val
CAC
[ENA]
¢þ
>W141143069
AWSA01000019
Actinomycetota
Intrasporangium oryzae NRRL B-24470 [AWSA]
23361
23437
+
Val
CAC
[ENA]
¡û
>WENV183704507
PDWI01000316
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
26027
25952
-
Val
CAC
[ENA]
¢þ
>WENV183719951
PDWJ01023770
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3375
3450
+
Val
CAC
[ENA]
¢þ
>WENV183722065
PDWJ01103547
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1872
1797
-
Val
CAC
[ENA]
¢þ
>WENV183749101
PPFU01119573
[PPFU] hypolithon metagenome; Antarctic Hypolithon
146
72
-
Val
CAC
[ENA]
¢þ
>WENV170552023
CXWJ01035107
[CXWJ] wastewater metagenome; activated sludge
1912
1836
-
Val
CAC
[ENA]
¢þ
>WENV170662359
JXWW01046210
[JXWW] soil metagenome; rice field; organic GM Plot
134
58
-
Val
CAC
[ENA]
¢þ
>C181196309
CP031145
Actinomycetota
Intrasporangium calvum C5 [CP031145]
1867378
1867302
-
Val
CAC
-
¡û
>C181197186
CP031229
Actinomycetota
Ornithinimicrobium avium AMA3305 [CP031229]
721680
721605
-
Val
CAC
-
¡û
>C191150905
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
2103004
2103079
+
Val
CAC
-
¡û
>C191158373
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
1872645
1872720
+
Val
CAC
-
¡û
>C191183666
CP040887
Actinomycetota
Serinicoccus chungangensis CCUG 59777 [CP040887]
1552212
1552286
+
Val
CAC
-
¡û
>W141564789
JIBA01000013
Actinomycetota
Intrasporangiaceae bacterium URHB0013 [JIBA]
227810
227886
+
Val
CAC
[ENA]
¡û
>C151077119
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
3138745
3138819
+
Val
CAC
-
¡û
>C151090460
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
2529367
2529443
+
Val
CAC
-
¡û
>C11111442
CP002343
Actinomycetota
Intrasporangium calvum DSM 43043 [CP002343]
2129995
2129919
-
Val
CAC
[Ensembl]
¡û
>W1511568130
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
1658834
1658758
-
Val
CAC
[ENA]
¡û
>W11155933
AFAQ01000968
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
274
198
-
Val
CAC
[ENA]
¡û
>W11177044
AFYF01000099
Actinomycetota
Serinicoccus profundi MCCC 1A05965 [AFYF]
21151
21225
+
Val
CAC
[ENA]
¡û
>W1610062572
BCNQ01000015
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
2011
1935
-
Val
CAC
[ENA]
¡û
>W1610069668
BCSR01000013
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
17944
17868
-
Val
CAC
[ENA]
¡û
>W1610722287
LMCM01000006
Actinomycetota
Phycicoccus sp. Root101 [LMCM]
416532
416456
-
Val
CAC
[ENA]
¡û
>W1610727564
LMGM01000001
Actinomycetota
Phycicoccus sp. Root563 [LMGM]
414672
414596
-
Val
CAC
[ENA]
¡û
>W1610742439
LMSC01000012
Actinomycetota
Phycicoccus sp. Soil748 [LMSC]
176981
177057
+
Val
CAC
[ENA]
¡û
>W1610743306
LMSS01000001
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
404289
404365
+
Val
CAC
[ENA]
¡û
>W1610743383
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
2547125
2547049
-
Val
CAC
[ENA]
¡û
>W1610851115
LQBL01000007
Actinomycetota
Serinicoccus chungangensis [LQBL]
9363
9287
-
Val
CAC
[ENA]
¡û
>W1710060048
BCNQ01000015
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
2011
1935
-
Val
CAC
[ENA]
¡û
>W1710067041
BCSR01000013
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
17944
17868
-
Val
CAC
[ENA]
¡û
>W1710552745
FOHB01000002
Actinomycetota
Pedococcus cremeus [FOHB]
409522
409599
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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