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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174453 (45 seq.)
>W1710927135
LOFG01000012
Gammaproteobacteria
Pseudoalteromonas sp. H103 [LOFG]
187296
187220
-
Arg
TCT
[ENA]
¡û
>W1711724380
MTQD01000005
Gammaproteobacteria
Pseudoalteromonas sp. EB27 [MTQD]
186325
186249
-
Arg
TCT
[ENA]
¡û
>C171097267
CP019628
Gammaproteobacteria
Pseudoalteromonas aliena EH1 [CP019628]
2980679
2980755
+
Arg
TCT
-
¡û
>W131051909
AMYA01000015
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 [AMYA]
71773
71697
-
Arg
TCT
[ENA]
¡û
>C016441
CR954246
Gammaproteobacteria
Pseudoalteromonas translucida TAC125 [CR954246, CR954247]
2183787
2183711
-
Arg
TCT
[Ensembl]
¡û
>W141086536
AUTI01000326
Gammaproteobacteria
Pseudoalteromonas sp. TB25 TB25 [AUTI]
14903
14979
+
Arg
TCT
[ENA]
¡û
>W141086614
AUTJ01000074
Gammaproteobacteria
Pseudoalteromonas sp. TB13 TB13 [AUTJ]
13145
13069
-
Arg
TCT
[ENA]
¡û
>W141086709
AUTK01000413
Gammaproteobacteria
Pseudoalteromonas sp. AC163 AC163 [AUTK]
14903
14979
+
Arg
TCT
[ENA]
¡û
>W141086839
AUTL01000266
Gammaproteobacteria
Pseudoalteromonas sp. TAE79 TAE79 [AUTL]
9483
9407
-
Arg
TCT
[ENA]
¡û
>W141086880
AUTM01000128
Gammaproteobacteria
Pseudoalteromonas sp. TAE80 TAE80 [AUTM]
9483
9407
-
Arg
TCT
[ENA]
¡û
>W141087018
AUTN01000140
Gammaproteobacteria
Pseudoalteromonas sp. TAE56 TAE56 [AUTN]
13949
14025
+
Arg
TCT
[ENA]
¡û
>W141087193
AUTP01000280
Gammaproteobacteria
Pseudoalteromonas sp. TAB23 TAB23 [AUTP]
35494
35570
+
Arg
TCT
[ENA]
¡û
>W141087306
AUTQ01000218
Gammaproteobacteria
Pseudoalteromonas sp. TB64 TB64 [AUTQ]
3853
3929
+
Arg
TCT
[ENA]
¡û
>W141087377
AUTR01000040
Gammaproteobacteria
Pseudoalteromonas sp. S8-8 [AUTR]
49128
49204
+
Arg
TCT
[ENA]
¡û
>W141087501
AUTS01000042
Gammaproteobacteria
Pseudoalteromonas sp. S8-38 [AUTS]
49128
49204
+
Arg
TCT
[ENA]
¡û
>WENV182565865
OJEI01000540
[OJEI] seawater metagenome; Sea water
275
199
-
Arg
TCT
[ENA]
¢þ
>WENV182572940
OJFO01004933
[OJFO] seawater metagenome; Sea water
1035
959
-
Arg
TCT
[ENA]
¢þ
>WENV182590958
OJIK01005989
[OJIK] seawater metagenome; Sea water
2024
1948
-
Arg
TCT
[ENA]
¢þ
>WENV183057981
OLHN01000366
[OLHN] seawater metagenome; Sea water
15197
15273
+
Arg
TCT
[ENA]
¢þ
>WENV170023849
BCQL01006159
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1828
1904
+
Arg
TCT
[ENA]
¢þ
>C181010122
CP011025
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [CP011025, CP011026]
1168424
1168500
+
Arg
TCT
-
¡û
>C181010566
CP011036
Gammaproteobacteria
Pseudoalteromonas nigrifaciens KMM 661 [CP011036, CP011037]
2486148
2486072
-
Arg
TCT
-
¡û
>C191051551
CP027523
Gammaproteobacteria
Pseudoalteromonas carrageenovora KCTC 22325 [CP027523, CP027524]
2506819
2506743
-
Arg
TCT
-
¡û
>C191179278
CP040558
Gammaproteobacteria
Pseudoalteromonas distincta 16-SW-7 [CP040558]
846999
847075
+
Arg
TCT
-
¡û
>W141621781
JJNY01000045
Gammaproteobacteria
Pseudoalteromonas sp. S3431 [JJNY]
15084
15160
+
Arg
TCT
[ENA]
¡û
>W141621851
JJNZ01000008
Gammaproteobacteria
Pseudoalteromonas fuliginea citrea [JJNZ]
127990
127914
-
Arg
TCT
[ENA]
¡û
>W1910377961
FUKV01000014
Gammaproteobacteria
Pseudoalteromonas sp. JB197 [FUKV]
6093
6169
+
Arg
TCT
[ENA]
¡û
>W1810155622
PJAV01000112
Gammaproteobacteria
Pseudoalteromonas sp. 78C3 [PJAV]
6851
6927
+
Arg
TCT
[ENA]
¡û
>W1810156633
PJBK01000093
Gammaproteobacteria
Pseudoalteromonas sp. GutCa3 [PJBK]
6756
6832
+
Arg
TCT
[ENA]
¡û
>W1810157035
PJBQ01000065
Gammaproteobacteria
Pseudoalteromonas arctica MelAa3 [PJBQ]
9396
9320
-
Arg
TCT
[ENA]
¡û
>W1810157105
PJBR01000044
Gammaproteobacteria
Pseudoalteromonas sp. MelDa3 [PJBR]
20749
20673
-
Arg
TCT
[ENA]
¡û
>W1511399106
JTDZ01000040
Gammaproteobacteria
Pseudoalteromonas elyakovii NCIMB 2033 = ATCC BAA-314 [JTDZ]
353526
353450
-
Arg
TCT
[ENA]
¡û
>W11121959
ADOP01000004
Gammaproteobacteria
Pseudoalteromonas distincta ANT/505 [ADOP]
119108
119032
-
Arg
TCT
[ENA]
¡û
>W1511479531
JWIG01000001
Gammaproteobacteria
Pseudoalteromonas distincta ATCC 700518 [JWIG]
113719
113643
-
Arg
TCT
[ENA]
¡û
>W1511518609
JXYD01000048
Gammaproteobacteria
Pseudoalteromonas fuliginea S2292 [JXYD]
15401
15477
+
Arg
TCT
[ENA]
¡û
>C161051996
CP013138
Gammaproteobacteria
Pseudoalteromonas sp. Bsw20308 BSW20308 [CP013138]
2918973
2918897
-
Arg
TCT
-
¡û
>W121024748
AHBY01000009
Gammaproteobacteria
Pseudoalteromonas arctica A 37-1-2 [AHBY]
9473
9397
-
Arg
TCT
[ENA]
¡û
>W121123045
BADT01000168
Gammaproteobacteria
Pseudoalteromonas sp. BSi20652 [BADT]
15228
15152
-
Arg
TCT
[ENA]
¡û
>W121123166
BADV01000016
Gammaproteobacteria
Pseudoalteromonas sp. BSi20429 [BADV]
8997
9073
+
Arg
TCT
[ENA]
¡û
>W121123391
BADY01000170
Gammaproteobacteria
Pseudoalteromonas sp. BSi20495 [BADY]
6895
6971
+
Arg
TCT
[ENA]
¡û
>W1610620845
LHPH01000016
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
60295
60219
-
Arg
TCT
[ENA]
¡û
>W1610635608
LITL01000024
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
16112
16188
+
Arg
TCT
[ENA]
¡û
>W1610784677
LOFG01000012
Gammaproteobacteria
Pseudoalteromonas sp. H103 [LOFG]
187296
187220
-
Arg
TCT
[ENA]
¡û
>W1710748712
LHPH01000016
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
60295
60219
-
Arg
TCT
[ENA]
¡û
>W1710770236
LITL01000024
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
16112
16188
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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