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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174721 (51 seq.)
>W1711183407
LWLA01000012
Actinomycetota
Streptomyces sp. CB03911 [LWLA]
490425
490349
-
Thr
TGT
[ENA]
¡û
>W1711427918
MIGA01000045
Actinomycetota
Streptomyces platensis [MIGA]
43835
43761
-
Thr
TGT
[ENA]
¡û
>W1711455932
MJAJ01000024
Actinomycetota
Streptomyces sp. LUP30 [MJAJ]
18933
18857
-
Thr
TGT
[ENA]
¡û
>W1711738121
MUAY01000327
Actinomycetota
Streptomyces angustmyceticus [MUAY]
2891
2965
+
Thr
TGT
[ENA]
¡û
>C171058154
CP017157
Actinomycetota
Streptomyces lydicus 103 [CP017157]
7484212
7484138
-
Thr
TGT
-
¡û
>W131160431
AQWO01000007
Actinomycetota
Streptomyces sp. FxanaC1 [AQWO]
286284
286210
-
Thr
TGT
[ENA]
¡û
>W131181541
AROY01001956
Actinomycetota
Streptomyces noursei CCRC 11814 [AROY]
1476
1550
+
Thr
TGT
[ENA]
¡û
>WENV180023466
FTHY01000434
[FTHY] metagenome; soil
7423
7349
-
Thr
TGT
[ENA]
¢þ
>WENV180024816
FTIJ01066810
[FTIJ] metagenome; soil
266
340
+
Thr
TGT
[ENA]
¢þ
>W141037472
ALNP01000001
Actinomycetota
Streptomyces sp. AA0539 [ALNP]
370993
370919
-
Thr
TGT
[ENA]
¡û
>W141153076
AXDB02000086
Actinomycetota
Streptomyces noursei PD-1 [AXDB]
52895
52969
+
Thr
TGT
[ENA]
¡û
>WENV170565571
FJVZ01000337
[FJVZ] metagenome; soil
8273
8347
+
Thr
TGT
[ENA]
¢þ
>C181179777
CP029541
Actinomycetota
Streptomyces sp. NEAU-S7GS2 [CP029541]
5737815
5737889
+
Thr
TGT
-
¡û
>C191062870
CP029042
Actinomycetota
Streptomyces lydicus WYEC 108 [CP029042]
5454354
5454428
+
Thr
TGT
-
¡û
>W141757922
JNYG01001118
Actinomycetota
Streptomyces decoyicus [JNYG]
10473
10397
-
Thr
TGT
[ENA]
¡û
>W141759001
JNZA01000006
Actinomycetota
Streptomyces lydicus [JNZA]
116042
116116
+
Thr
TGT
[ENA]
¡û
>W141761709
JOAX01000010
Actinomycetota
Streptomyces ochraceiscleroticus [JOAX]
56836
56912
+
Thr
TGT
[ENA]
¡û
>W141766430
JODY01000046
Actinomycetota
Streptomyces catenulae [JODY]
15356
15282
-
Thr
TGT
[ENA]
¡û
>W141767141
JOEL01000010
Actinomycetota
Streptomyces celluloflavus [JOEL]
115245
115319
+
Thr
TGT
[ENA]
¡û
>W141770041
JOGF01001065
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
526
450
-
Thr
TGT
[ENA]
¡û
>W1910128969
BHXC01000007
Actinomycetota
Streptomyces noursei NBRC 14147 [BHXC]
92064
92138
+
Thr
TGT
[ENA]
¡û
>W1910596042
LACP01000072
Actinomycetota
Streptomyces sp. SceaMP-e96 [LACP]
1667
1593
-
Thr
TGT
[ENA]
¡û
>W1910873838
NDXL01000002
Actinomycetota
Streptomyces kasugaensis BCRC 12349 [NDXL]
1274236
1274310
+
Thr
TGT
[ENA]
¡û
>W1911083819
NNBP01000028
Actinomycetota
Streptomyces sp. CB02959 [NNBP]
95235
95161
-
Thr
TGT
[ENA]
¡û
>W1911243863
NSGX01000001
Actinomycetota
Streptomyces sp. 2321.6 [NSGX]
4736790
4736864
+
Thr
TGT
[ENA]
¡û
>W1911765934
QXDE01000001
Actinomycetota
Streptomyces sp. 2233.2 [QXDE]
2511376
2511302
-
Thr
TGT
[ENA]
¡û
>W1810072386
PEFH01000003
Actinomycetota
Streptomyces sp. 76 [PEFH]
1152088
1152014
-
Thr
TGT
[ENA]
¡û
>W1810072427
PEFI01000001
Actinomycetota
Streptomyces sp. 2233.5 [PEFI]
3199130
3199056
-
Thr
TGT
[ENA]
¡û
>W1810089172
PGEO01000001
Actinomycetota
Streptomyces sp. 2333.5 [PGEO]
4680719
4680793
+
Thr
TGT
[ENA]
¡û
>W1810869804
QUAC01000143
Actinomycetota
Streptomyces inhibens NEAU-D10 [QUAC]
10279
10205
-
Thr
TGT
[ENA]
¡û
>C151013660
CP006871
Actinomycetota
Streptomyces noursei ZPM [CP006871]
5762629
5762703
+
Thr
TGT
[Ensembl]
¡û
>C151028681
CP007574
Actinomycetota
Streptomyces noursei NK660 [CP007574]
5381358
5381432
+
Thr
TGT
[Ensembl]
¡û
>W1510012760
BBNO01000001
Actinomycetota
Streptomyces lydicamycinicus NBRC 110027 [BBNO]
73589
73663
+
Thr
TGT
[ENA]
¡û
>W1511518826
JXYI02000049
Actinomycetota
Streptomyces ahygroscopicus subsp. wuyiensis CK-15 [JXYI]
24272
24198
-
Thr
TGT
[ENA]
¡û
>W1511707048
LGUU01000194
Actinomycetota
Streptomyces decoyicus NRRL 2666 [LGUU]
76469
76393
-
Thr
TGT
[ENA]
¡û
>W121061442
AJGV01000076
Actinomycetota
Streptomyces auratus AGR0001 [AJGV]
4139
4065
-
Thr
TGT
[ENA]
¡û
>W1610049872
BBFI01000486
Actinomycetota
Streptomyces sp. JCM 17819 [BBFI]
857
933
+
Thr
TGT
[ENA]
¡û
>W1610052024
BBHO01000125
Actinomycetota
Streptomyces lucensis JCM 4490 [BBHO]
2420
2346
-
Thr
TGT
[ENA]
¡û
>W1710046271
BBFI01000486
Actinomycetota
Streptomyces sp. JCM 17819 [BBFI]
857
933
+
Thr
TGT
[ENA]
¡û
>W1710048402
BBHO01000125
Actinomycetota
Streptomyces lucensis JCM 4490 [BBHO]
2420
2346
-
Thr
TGT
[ENA]
¡û
>W1710502213
FMCH01000476
Actinomycetota
Streptomyces sp. DvalAA-14 [FMCH]
38821
38895
+
Thr
TGT
[ENA]
¡û
>W1710503887
FMHL01000071
Actinomycetota
Streptomyces sp. SceaMP-e96 [FMHL]
1667
1593
-
Thr
TGT
[ENA]
¡û
>W1710526997
FNKS01000001
Actinomycetota
Streptomyces sp. KS_16 [FNKS]
3258705
3258631
-
Thr
TGT
[ENA]
¡û
>W1710534767
FNSB01000001
Actinomycetota
Streptomyces sp. 2224.1 [FNSB]
1211573
1211499
-
Thr
TGT
[ENA]
¡û
>W1710535034
FNSG01000001
Actinomycetota
Streptomyces sp. 2112.2 [FNSG]
4763280
4763354
+
Thr
TGT
[ENA]
¡û
>W1710535212
FNSJ01000002
Actinomycetota
Streptomyces sp. 2314.4 [FNSJ]
123075
123149
+
Thr
TGT
[ENA]
¡û
>W1710536880
FNTM01000001
Actinomycetota
Streptomyces sp. 2133.1 [FNTM]
4764011
4764085
+
Thr
TGT
[ENA]
¡û
>W1710537100
FNTP01000001
Actinomycetota
Streptomyces sp. 2112.3 [FNTP]
3335009
3334935
-
Thr
TGT
[ENA]
¡û
>W1710576458
FPAB01000001
Actinomycetota
Streptomyces harbinensis [FPAB]
222669
222595
-
Thr
TGT
[ENA]
¡û
>W1710610251
FYEY01000001
Actinomycetota
Streptomyces sp. 2114.4 [FYEY]
4740975
4741049
+
Thr
TGT
[ENA]
¡û
>W1710767516
LIQL01000691
Actinomycetota
Streptomyces diastatochromogenes [LIQL]
3096
3170
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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