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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.174818 (128 seq.)
>W131008893
AHXG01000015
Bacillota
Enterococcus faecium E1622 [AHXG]
296
371
+
Met
CAT
[ENA]
¡û
>W131009118
AHXK01000055
Bacillota
Enterococcus faecium E1630 [AHXK]
4050
4125
+
Met
CAT
[ENA]
¡û
>W131010053
AHYF01000034
Bacillota
Enterococcus faecium E1321 [AHYF]
3948
4023
+
Met
CAT
[ENA]
¡û
>W131010136
AHYH01000015
Bacillota
Enterococcus faecium E2369 [AHYH]
296
371
+
Met
CAT
[ENA]
¡û
>W131011242
AIIK01000018
Bacillota
Enterococcus faecalis B15725 [AIIK]
297
222
-
Met
CAT
[ENA]
¡û
>W131012455
AIJI01000001
Bacillota
Enterococcus faecalis B1327 [AIJI]
3954
4029
+
Met
CAT
[ENA]
¡û
>W131014326
AIQT01000006
Bacillota
Enterococcus faecalis B2593 [AIQT]
6001
6076
+
Met
CAT
[ENA]
¡û
>W131014866
AIRD01000005
Bacillota
Enterococcus faecalis B3042 [AIRD]
5724
5799
+
Met
CAT
[ENA]
¡û
>W1710901809
LNLG01000001
Bacillota
Enterococcus faecium [LNLG]
80292
80217
-
Met
CAT
[ENA]
¡û
>W131019602
AIUX01000005
Bacillota
Enterococcus faecium VAN 222 [AIUX]
3880
3955
+
Met
CAT
[ENA]
¡û
>W131019660
AIUY01000006
Bacillota
Enterococcus faecium VAN 332 [AIUY]
5913
5988
+
Met
CAT
[ENA]
¡û
>W1710903441
LNMA01000119
Bacillota
Enterococcus faecium [LNMA]
45033
44958
-
Met
CAT
[ENA]
¡û
>W1710903984
LNMH01000077
Bacillota
Enterococcus faecium [LNMH]
9993
9918
-
Met
CAT
[ENA]
¡û
>W1710904009
LNMH01000144
Bacillota
Enterococcus faecium [LNMH]
202
277
+
Met
CAT
[ENA]
¡û
>W1710904806
LNMR01000118
Bacillota
Enterococcus faecium [LNMR]
10768
10693
-
Met
CAT
[ENA]
¡û
>W1710915753
LNUM01000005
Bacillota
Pediococcus acidilactici [LNUM]
557
632
+
Met
CAT
[ENA]
¡û
>W131027156
AJAE01000007
Bacillota
Enterococcus faecium UAA1433 [AJAE]
4062
4137
+
Met
CAT
[ENA]
¡û
>W131027207
AJAF01000009
Bacillota
Enterococcus faecium UAA1484 [AJAF]
3948
4023
+
Met
CAT
[ENA]
¡û
>W131027781
AJAQ01000012
Bacillota
Enterococcus pallens ATCC BAA-351 [AJAQ]
4029
4104
+
Met
CAT
[ENA]
¡û
>W131028701
AJBI01000008
Bacillota
Enterococcus faecalis SF1592 [AJBI]
5733
5808
+
Met
CAT
[ENA]
¡û
>W131032581
AJEB01000005
Bacillota
Enterococcus faecalis SF370 [AJEB]
3954
4029
+
Met
CAT
[ENA]
¡û
>W131032876
AJEG01000003
Bacillota
Enterococcus faecalis CH116 [AJEG]
4086
4161
+
Met
CAT
[ENA]
¡û
>W131033005
AJEI01000002
Bacillota
Enterococcus faecalis T16 [AJEI]
796
871
+
Met
CAT
[ENA]
¡û
>W1711005304
LQNM01000011
Bacillota
Pediococcus pentosaceus [LQNM]
823
898
+
Met
CAT
[ENA]
¡û
>W1711091251
LTBJ01000174
Bacillota
Enterococcus faecium [LTBJ]
241
316
+
Met
CAT
[ENA]
¡û
>W1711096549
LTHV01000155
Bacillota
Enterococcus sp. HMSC072H05 [LTHV]
47
120
+
Met
CAT
[ENA]
¡û
>W131189852
ASDW01000003
Bacillota
Enterococcus faecalis RMC65 [ASDW]
3954
4029
+
Met
CAT
[ENA]
¡û
>W1711228949
LXWZ01000002
Bacillota
Enterococcus faecium [LXWZ]
933
1008
+
Met
CAT
[ENA]
¡û
>W131202138
ASWO01000001
Bacillota
Enterococcus sulfureus ATCC 49903 [ASWO]
791611
791536
-
Met
CAT
[ENA]
¡û
>W1711424891
MIEK01000052
Bacillota
Enterococcus rivorum [MIEK]
14334
14259
-
Met
CAT
[ENA]
¡û
>W1711457738
MJBV01000006
Bacillota
Enterococcus faecalis [MJBV]
121325
121250
-
Met
CAT
[ENA]
¡û
>W1711459917
MJDW01000014
Bacillota
Enterococcus hirae [MJDW]
330
405
+
Met
CAT
[ENA]
¡û
>W1711460009
MJDY01000009
Bacillota
Enterococcus faecium [MJDY]
74573
74498
-
Met
CAT
[ENA]
¡û
>W1711705692
MSQP01000010
Bacillota
Enterococcus faecalis [MSQP]
82063
81988
-
Met
CAT
[ENA]
¡û
>W1712067393
NGKY01000001
Bacillota
Enterococcus sp. 7E2_DIV0204 [NGKY]
858140
858065
-
Met
CAT
[ENA]
¡û
>W1712068247
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
1218901
1218828
-
Met
CAT
[ENA]
¡û
>W1712068581
NGLT01000001
Bacillota
Enterococcus faecium [NGLT]
1488922
1488847
-
Met
CAT
[ENA]
¡û
>W1712069009
NGMB01000001
Bacillota
Enterococcus faecium [NGMB]
2625733
2625658
-
Met
CAT
[ENA]
¡û
>W1712069083
NGMC01000002
Bacillota
Enterococcus faecium [NGMC]
179174
179249
+
Met
CAT
[ENA]
¡û
>W1712097178
NIBP01000002
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
346658
346731
+
Met
CAT
[ENA]
¡û
>WENV180121305
OASR01000069
[OASR] human gut metagenome; faeces
73443
73368
-
Met
CAT
[ENA]
¢þ
>WENV180138138
OATP01007603
[OATP] human gut metagenome; faeces
1180
1255
+
Met
CAT
[ENA]
¢þ
>WENV180145845
OAUD01003438
[OAUD] human gut metagenome; faeces
43
118
+
Met
CAT
[ENA]
¢þ
>WENV180228674
OBCD01005822
[OBCD] human skin metagenome; Infant 2 DOL 22 skin
257
182
-
Met
CAT
[ENA]
¢þ
>WENV180228790
OBCE01001044
[OBCE] human gut metagenome; human gut
667
592
-
Met
CAT
[ENA]
¢þ
>WENV180228902
OBCF01006435
[OBCF] human gut metagenome; human gut
76
151
+
Met
CAT
[ENA]
¢þ
>WENV180410839
OBUX01012164
[OBUX] human gut metagenome; faeces
415
340
-
Met
CAT
[ENA]
¢þ
>WENV180456902
OBXT01000011
[OBXT] human gut metagenome; faeces
247
322
+
Met
CAT
[ENA]
¢þ
>WENV180490050
OBZT01003586
[OBZT] human gut metagenome; faeces
735
810
+
Met
CAT
[ENA]
¢þ
>WENV180503686
OCAN01000012
[OCAN] human gut metagenome; faeces
319415
319342
-
Met
CAT
[ENA]
¢þ
>WENV180566267
OCLI01000002
[OCLI] human gut metagenome; human gut
780017
779942
-
Met
CAT
[ENA]
¢þ
>WENV180569077
OCLQ01000002
[OCLQ] human gut metagenome; human gut
183
258
+
Met
CAT
[ENA]
¢þ
>WENV180625020
OCQI01001046
[OCQI] human gut metagenome; human gut
76
151
+
Met
CAT
[ENA]
¢þ
>WENV181200436
OERK01007152
[OERK] metagenome; water of meat washing
428
353
-
Met
CAT
[ENA]
¢þ
>WENV181201380
OERN01005658
[OERN] metagenome; water of meat washing
499
574
+
Met
CAT
[ENA]
¢þ
>WENV181256363
OFFT01002861
[OFFT] mouse gut metagenome; faeces
8575
8500
-
Met
CAT
[ENA]
¢þ
>WENV181303132
OFHP01001498
[OFHP] mouse gut metagenome; faeces
10670
10595
-
Met
CAT
[ENA]
¢þ
>W141147293
AWWO01000143
Bacillota
Enterococcus faecium UC8733 [AWWO]
1186
1111
-
Met
CAT
[ENA]
¡û
>W141147336
AWWP01000086
Bacillota
Enterococcus faecium UC10237 [AWWP]
118
193
+
Met
CAT
[ENA]
¡û
>WENV181577619
OGJX01004125
[OGJX] metagenome; Human gut stool
3519
3594
+
Met
CAT
[ENA]
¢þ
>W141158916
AXOL01000082
Bacillota
Enterococcus faecium 10/96A [AXOL]
6088
6163
+
Met
CAT
[ENA]
¡û
>WENV181804171
OGSE01002850
[OGSE] human gut metagenome; fecal sample 3 from infant 2
183
258
+
Met
CAT
[ENA]
¢þ
>W141193762
AYSH01000019
Bacillota
Vagococcus lutrae LBD1 [AYSH]
865
938
+
Met
CAT
[ENA]
¡û
>WENV182493558
OISU01032859
[OISU] human gut metagenome; human gut
309
384
+
Met
CAT
[ENA]
¢þ
>WENV182604184
OJJO01000065
[OJJO] metagenome; faeces
328
403
+
Met
CAT
[ENA]
¢þ
>W141261392
CCAT010000056
Bacillota
Clostridium ihumii anorexicamassiliense AP5 [CCAT]
205
130
-
Met
CAT
[ENA]
¡û
>WENV182813345
OJYC01000050
[OJYC] human gut metagenome; human gut
76
151
+
Met
CAT
[ENA]
¢þ
>WENV182829400
OKDP01000153
[OKDP] human gut metagenome; human gut
1279
1354
+
Met
CAT
[ENA]
¢þ
>W141281846
JAIA01000001
Bacillota
Enterococcus faecalis B348 [JAIA]
897
972
+
Met
CAT
[ENA]
¡û
>WENV182841046
OKHP01004390
[OKHP] human gut metagenome; human gut
163
238
+
Met
CAT
[ENA]
¢þ
>WENV182847285
OKJW01000529
[OKJW] human gut metagenome; human gut
4478
4403
-
Met
CAT
[ENA]
¢þ
>WENV182860416
OKOV01000014
[OKOV] human gut metagenome; human gut
75525
75450
-
Met
CAT
[ENA]
¢þ
>WENV182930197
OKUQ01053051
[OKUQ] human gut metagenome; feces
446
521
+
Met
CAT
[ENA]
¢þ
>WENV183522944
ONZR01012998
[ONZR] human gut metagenome; human gut
676
751
+
Met
CAT
[ENA]
¢þ
>WENV170542721
CXQH01000597
[CXQH] human gut metagenome genome assembly hC3, contig hC3_contig001864.; ENVO:feces
2344
2269
-
Met
CAT
[ENA]
¢þ
>WENV170545497
CXSC01000296
[CXSC] human gut metagenome genome assembly hG5, contig hG5_contig000614.; ENVO:feces
10
85
+
Met
CAT
[ENA]
¢þ
>WENV170545803
CXSH01002681
[CXSH] human gut metagenome genome assembly hG8, contig hG8_contig003709.; ENVO:feces
353
428
+
Met
CAT
[ENA]
¢þ
>WENV170546106
CXSN01000504
[CXSN] human gut metagenome genome assembly hH3, contig hH3_contig008817.; ENVO:feces
709
636
-
Met
CAT
[ENA]
¢þ
>WENV170546170
CXSN01008811
[CXSN] human gut metagenome genome assembly hH3, contig hH3_contig008817.; ENVO:feces
480
405
-
Met
CAT
[ENA]
¢þ
>WENV170546399
CXSR01002529
[CXSR] human gut metagenome genome assembly hH7, contig hH7_contig005603.; ENVO:feces
1043
968
-
Met
CAT
[ENA]
¢þ
>C181020722
CP016766
Bacillota
Ligilactobacillus agilis La3 [CP016766]
378913
378988
+
Met
CAT
-
¡û
>C181020776
CP016766
Bacillota
Ligilactobacillus agilis La3 [CP016766]
1152265
1152190
-
Met
CAT
-
¡û
>C181042774
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
1692493
1692568
+
Met
CAT
-
¡û
>C181056763
CP022059
Bacillota
Enterococcus faecalis FDAARGOS_338 [CP022059]
356755
356680
-
Met
CAT
-
¡û
>C181081222
CP023423
Bacillota
Enterococcus faecium K60-39 [CP023423]
2477180
2477105
-
Met
CAT
-
¡û
>C181114792
CP025223
Bacillota
Enterococcus sp. CR-Ec1 [CP025223]
3452899
3452826
-
Met
CAT
-
¡û
>C191182358
CP040740
Bacillota
Enterococcus faecium VRE1 [CP040740]
2451971
2451896
-
Met
CAT
-
¡û
>C191215525
LR135226
Bacillota
Enterococcus faecium [LR135226]
2575184
2575109
-
Met
CAT
-
¡û
>C191215666
LR135243
Bacillota
Enterococcus faecium [LR135243]
2510205
2510130
-
Met
CAT
-
¡û
>C191215874
LR135278
Bacillota
Enterococcus faecium [LR135278]
1858531
1858456
-
Met
CAT
-
¡û
>C191216917
LR135394
Bacillota
Enterococcus faecium [LR135394]
2629039
2628964
-
Met
CAT
-
¡û
>C191217320
LR135474
Bacillota
Enterococcus faecium [LR135474]
2241926
2241851
-
Met
CAT
-
¡û
>W09115448
ACAK01000010
Bacillota
Enterococcus faecalis AR01/DG [ACAK]
279
354
+
Met
CAT
[ENA]
¡û
>W1910472898
FXEV01000070
Bacillota
Enterococcus faecium VREN2303 [FXEV]
4208
4283
+
Met
CAT
[ENA]
¡û
>W1910473330
FXFC01000083
Bacillota
Enterococcus faecium VREN1901 [FXFC]
9879
9804
-
Met
CAT
[ENA]
¡û
>W1910473881
FXFL01000058
Bacillota
Enterococcus faecium VREN3203 [FXFL]
651
726
+
Met
CAT
[ENA]
¡û
>W1910474305
FXFS01000084
Bacillota
Enterococcus faecium VREN2173 [FXFS]
301
376
+
Met
CAT
[ENA]
¡û
>W1910475924
FXGS01000058
Bacillota
Enterococcus faecium VREN3306 [FXGS]
9891
9816
-
Met
CAT
[ENA]
¡û
>W1910477252
FXHO01000001
Bacillota
Enterococcus faecium VREN3644 [FXHO]
9873
9798
-
Met
CAT
[ENA]
¡û
>W1910477434
FXHR01000001
Bacillota
Enterococcus faecium VREN3639 [FXHR]
153117
153192
+
Met
CAT
[ENA]
¡û
>W1910477746
FXHW01000018
Bacillota
Enterococcus faecium VREN3305 [FXHW]
8160
8085
-
Met
CAT
[ENA]
¡û
>W1910481252
FXKB01000071
Bacillota
Enterococcus faecium VREN3655 [FXKB]
9863
9788
-
Met
CAT
[ENA]
¡û
>W1910577247
JTFB01000003
Bacillota
Enterococcus faecalis VRE109 [JTFB]
103191
103116
-
Met
CAT
[ENA]
¡û
>W1910605822
LEPE01000005
Bacillota
Enterococcus faecalis 182EA1 [LEPE]
3707
3782
+
Met
CAT
[ENA]
¡û
>W1910607282
LEQD01000005
Bacillota
Enterococcus faecalis 61EA1 [LEQD]
3611
3686
+
Met
CAT
[ENA]
¡û
>W1910608659
LERC01000015
Bacillota
Enterococcus faecium 284EA1 [LERC]
278
203
-
Met
CAT
[ENA]
¡û
>W1910609208
LERN01000006
Bacillota
Enterococcus faecium 60BEA1 [LERN]
382807
382732
-
Met
CAT
[ENA]
¡û
>W1910609349
LERQ01000001
Bacillota
Enterococcus faecium 70AEA1 [LERQ]
410410
410335
-
Met
CAT
[ENA]
¡û
>W1910609551
LERT01000009
Bacillota
Enterococcus faecium 79EA1 [LERT]
27862
27787
-
Met
CAT
[ENA]
¡û
>W1910609569
LERT01000010
Bacillota
Enterococcus faecium 79EA1 [LERT]
452
377
-
Met
CAT
[ENA]
¡û
>W1910652364
LYQO01000042
Bacillota
Ligilactobacillus agilis UMNLA6 [LYQO]
17007
16932
-
Met
CAT
[ENA]
¡û
>W1910652408
LYQO01000104
Bacillota
Ligilactobacillus agilis UMNLA6 [LYQO]
894
969
+
Met
CAT
[ENA]
¡û
>W1910748249
MIXQ01000001
Bacillota
Fructilactobacillus lindneri TMW 1.1285 [MIXQ]
574338
574263
-
Met
CAT
[ENA]
¡û
>W10105169
ACXB01000023
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
689
764
+
Met
CAT
[ENA]
¡û
>W10124578
AEBH01000026
Bacillota
Enterococcus faecalis TX4244 [AEBH]
55
130
+
Met
CAT
[ENA]
¡û
>W11107489
ACXB01000023
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
689
764
+
Met
CAT
[ENA]
¡û
>W1511361265
JSBB01000009
Bacillota
Melissococcus plutonius 119 [JSBB]
270
195
-
Met
CAT
[ENA]
¡û
>W1511439248
JUNL01000030
Bacillota
Enterococcus faecalis 923_EFLS [JUNL]
51
126
+
Met
CAT
[ENA]
¡û
>W1511445268
JUVH01000094
Bacillota
Enterococcus faecalis 732_EFLS [JUVH]
252
177
-
Met
CAT
[ENA]
¡û
>W1511459146
JVKC01000040
Bacillota
Enterococcus faecalis 361_EFLS [JVKC]
171
246
+
Met
CAT
[ENA]
¡û
>W1511470529
JVWT01000308
Bacillota
Enterococcus faecium 1256_EFCM [JVWT]
79
154
+
Met
CAT
[ENA]
¡û
>W11131465
AEBH01000026
Bacillota
Enterococcus faecalis TX4244 [AEBH]
55
130
+
Met
CAT
[ENA]
¡û
>W1511632741
LDEC01000008
Bacillota
Enterococcus cecorum G-29 [LDEC]
36423
36348
-
Met
CAT
[ENA]
¡û
>W121121063
ALZV01000075
Bacillota
Enterococcus faecalis ERV73 [ALZV]
50
125
+
Met
CAT
[ENA]
¡û
>W1610031853
AYZD01000031
Bacillota
Liquorilactobacillus aquaticus DSM 21051 [AYZD]
583
658
+
Met
CAT
[ENA]
¡û
>W1710028780
AYZD01000031
Bacillota
Liquorilactobacillus aquaticus DSM 21051 [AYZD]
583
658
+
Met
CAT
[ENA]
¡û
>W1710659056
JXKD01000002
Bacillota
Enterococcus aquimarinus [JXKD]
253935
253860
-
Met
CAT
[ENA]
¡û
>W1710659948
JXLF01000079
Bacillota
Enterococcus termitis [JXLF]
911
836
-
Met
CAT
[ENA]
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Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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