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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175148 (19 seq.)
>W1710996543
LQBN01000001
Gammaproteobacteria
Thiomicrospira sp. WB1 [LQBN]
671496
671572
+
Pro
TGG
[ENA]
¡û
>W1710996616
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1163691
1163615
-
Pro
TGG
[ENA]
¡û
>W131164349
ARAR01000003
Gammaproteobacteria
Hydrogenovibrio halophilus DSM 15072 [ARAR]
950672
950748
+
Pro
TGG
[ENA]
¡û
>W1711585457
MNZS01000054
Gammaproteobacteria
Thiomicrospira sp. CG2_30_44_34 [MNZS]
1330
1406
+
Pro
TGG
[ENA]
¡û
>C025377
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
794243
794167
-
Pro
TGG
[Ensembl]
¡û
>WENV181415329
OGCL01008287
[OGCL] hot springs metagenome; Hot spring water
1267
1343
+
Pro
TGG
[ENA]
¢þ
>WENV170779643
LZQQ01000816
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
634
710
+
Pro
TGG
[ENA]
¢þ
>WENV170779740
LZQR01000178
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
3180
3104
-
Pro
TGG
[ENA]
¢þ
>C191011663
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
2106063
2106139
+
Pro
TGG
-
¡û
>C191098463
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1772550
1772474
-
Pro
TGG
-
¡û
>C191098466
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1772170
1772094
-
Pro
TGG
-
¡û
>C191134060
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
880142
880066
-
Pro
TGG
-
¡û
>W141776963
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
37570
37494
-
Pro
TGG
[ENA]
¡û
>W1810185530
PKGB01000004
Gammaproteobacteria
Hydrogenovibrio sp. SC-1 [PKGB]
68330
68406
+
Pro
TGG
[ENA]
¡û
>W121068379
AJUL01000009
Gammaproteobacteria
Thiothrix nivea DSM 5205 [AJUL]
1505252
1505176
-
Pro
TGG
[ENA]
¡û
>W1610851200
LQBN01000001
Gammaproteobacteria
Thiomicrospira sp. WB1 [LQBN]
671496
671572
+
Pro
TGG
[ENA]
¡û
>W1610851273
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1163691
1163615
-
Pro
TGG
[ENA]
¡û
>W1710532784
FNQP01000023
Gammaproteobacteria
Thiothrix caldifontis [FNQP]
32357
32281
-
Pro
TGG
[ENA]
¡û
>W1710594308
FSRE01000002
Gammaproteobacteria
Sulfurivirga caldicuralii [FSRE]
186883
186959
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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