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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175352 (16 seq.)
>W1711460809
MJGC01000132
Cyanobacteriota
Desertifilum tharense IPPAS B-1220 [MJGC]
119853
119780
-
Val
GAC
[ENA]
¡û
>W131036538
ALVW01000010
Cyanobacteriota
Mastigocladopsis repens PCC 10914 [ALVW]
301051
301124
+
Val
GAC
[ENA]
¡û
>w021632
AAVU01000022
Cyanobacteriota
Lyngbya sp. PCC 8106 [AAVU]
36197
36273
+
Val
GAC
[ENA]
¡û
>W141038572
ALVY01000223
Cyanobacteriota
Gloeocapsa sp. PCC 73106 [ALVY]
70257
70184
-
Val
GAC
[ENA]
¡û
>W141091959
AUZM01000061
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
26463
26536
+
Val
GAC
[ENA]
¡û
>WENV181411677
OGCI01038018
[OGCI] hot springs metagenome; Hot spring water
424
497
+
Val
GAC
[ENA]
¢þ
>W141242750
CAIS01000131
Cyanobacteriota
Richelia intracellularis HM01 [CAIS]
22685
22611
-
Val
GAC
[ENA]
¡û
>W141242859
CAIY01000016
Cyanobacteriota
Richelia intracellularis HH01 [CAIY]
21924
21850
-
Val
GAC
[ENA]
¡û
>WENV170996081
MWWF01138871
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
181
254
+
Val
GAC
[ENA]
¢þ
>W1910812562
MVDI01000011
Cyanobacteriota
Chroococcidiopsis sp. TS-821 [MVDI]
112129
112056
-
Val
GAC
[ENA]
¡û
>W1511501662
JXCA01000008
Cyanobacteriota
Scytonema tolypothrichoides VB-61278 [JXCA]
167026
166953
-
Val
GAC
[ENA]
¡û
>C131004802
CP003620
Cyanobacteriota
Crinalium epipsammum PCC 9333 [CP003620]
2388307
2388380
+
Val
GAC
[Ensembl]
¡û
>C131004358
CP003590
Cyanobacteriota
Pleurocapsa sp. PCC 7327 [CP003590]
3655444
3655371
-
Val
GAC
[Ensembl]
¡û
>C131005001
CP003646
Cyanobacteriota
Gloeocapsa sp. PCC 7428 [CP003646]
254903
254827
-
Val
GAC
[Ensembl]
¡û
>C131010352
CP003944
Cyanobacteriota
Dactylococcopsis salina PCC 8305 [CP003944]
37360
37433
+
Val
GAC
[Ensembl]
¡û
>C131010421
CP003945
Cyanobacteriota
Halothece sp. PCC 7418 [CP003945]
2800134
2800061
-
Val
GAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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