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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175411 (66 seq.)
>W1710900537
LNKA01000001
Gammaproteobacteria
Legionella adelaidensis [LNKA]
291774
291698
-
Pro
CGG
[ENA]
¡û
>W1710919572
LNXT01000009
Gammaproteobacteria
Legionella birminghamensis [LNXT]
54714
54790
+
Pro
CGG
[ENA]
¡û
>W1710919668
LNXV01000033
Gammaproteobacteria
Legionella brunensis [LNXV]
84797
84873
+
Pro
CGG
[ENA]
¡û
>W1710919699
LNXW01000009
Gammaproteobacteria
Legionella cherrii [LNXW]
427341
427265
-
Pro
CGG
[ENA]
¡û
>W1710919917
LNYB01000081
Gammaproteobacteria
Legionella feeleii [LNYB]
244911
244987
+
Pro
CGG
[ENA]
¡û
>W1710919977
LNYD01000001
Gammaproteobacteria
Fluoribacter gormanii [LNYD]
16104
16180
+
Pro
CGG
[ENA]
¡û
>W1710920045
LNYE01000029
Gammaproteobacteria
Legionella gratiana [LNYE]
270344
270268
-
Pro
CGG
[ENA]
¡û
>W1710920086
LNYF01000020
Gammaproteobacteria
Legionella hackeliae [LNYF]
732409
732333
-
Pro
CGG
[ENA]
¡û
>W1710920122
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
2028089
2028013
-
Pro
CGG
[ENA]
¡û
>W1710920160
LNYH01000137
Gammaproteobacteria
Legionella israelensis [LNYH]
12854
12778
-
Pro
CGG
[ENA]
¡û
>W1710920173
LNYI01000011
Gammaproteobacteria
Legionella lansingensis [LNYI]
87104
87180
+
Pro
CGG
[ENA]
¡û
>W1710920338
LNYM01000004
Gammaproteobacteria
Legionella micdadei [LNYM]
44720
44796
+
Pro
CGG
[ENA]
¡û
>W1710920491
LNYP01000031
Gammaproteobacteria
Legionella oakridgensis [LNYP]
124137
124061
-
Pro
CGG
[ENA]
¡û
>W1710920757
LNYW01000042
Gammaproteobacteria
Legionella shakespearei DSM 23087 [LNYW]
12955
13031
+
Pro
CGG
[ENA]
¡û
>W1710920836
LNYY01000019
Gammaproteobacteria
Legionella steelei [LNYY]
1072479
1072555
+
Pro
CGG
[ENA]
¡û
>W1711252416
LYOZ01000052
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
310199
310275
+
Pro
CGG
[ENA]
¡û
>W1711503410
MKTO01000049
Gammaproteobacteria
Legionella sp. 39-23 [MKTO]
328
252
-
Pro
CGG
[ENA]
¡û
>C171106581
CP020412
Gammaproteobacteria
Legionella longbeachae FDAARGOS_201 [CP020412]
3549220
3549144
-
Pro
CGG
-
¡û
>C171110824
CP020614
Gammaproteobacteria
Legionella micdadei NZ2015 [CP020614]
2516386
2516462
+
Pro
CGG
-
¡û
>W131169170
AREN01000057
Gammaproteobacteria
Legionella shakespearei DSM 23087 [AREN]
3170
3094
-
Pro
CGG
[ENA]
¡û
>WENV180293998
OBIY01008358
[OBIY] beach sand metagenome; beach sand
699
775
+
Pro
CGG
[ENA]
¢þ
>W141220995
AZYK01000073
Gammaproteobacteria
Legionella oakridgensis RV-2-2007 [AZYK]
36765
36841
+
Pro
CGG
[ENA]
¡û
>WENV182546060
OJBO01000634
[OJBO] seawater metagenome; Sea water
9457
9533
+
Pro
CGG
[ENA]
¢þ
>WENV182546774
OJBP01002666
[OJBP] seawater metagenome; Sea water
1918
1842
-
Pro
CGG
[ENA]
¢þ
>WENV182589201
OJIA01001547
[OJIA] seawater metagenome; Sea water
108
184
+
Pro
CGG
[ENA]
¢þ
>W141273108
CCSB01000001
Gammaproteobacteria
Legionella massiliensis [CCSB]
1209311
1209387
+
Pro
CGG
[ENA]
¡û
>W141273866
CCVW01000001
Gammaproteobacteria
Legionella massiliensis [CCVW]
1209311
1209387
+
Pro
CGG
[ENA]
¡û
>WENV170963598
MRWG01000348
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
5051
4975
-
Pro
CGG
[ENA]
¢þ
>C181019717
CP016397
Gammaproteobacteria
Legionella clemsonensis CDC-D5610 [CP016397]
2669175
2669251
+
Pro
CGG
-
¡û
>C181225081
LT906451
Gammaproteobacteria
Legionella lansingensis NCTC12830 [LT906451]
521063
520987
-
Pro
CGG
-
¡û
>C191159105
CP038273
Gammaproteobacteria
Legionella israelensis Bercovier 4 [CP038273]
1191195
1191271
+
Pro
CGG
-
¡û
>C191204107
LR134286
Gammaproteobacteria
Legionella oakridgensis NCTC11531 [LR134286]
3195708
3195784
+
Pro
CGG
-
¡û
>W141558772
JHWF01000001
Gammaproteobacteria
Legionella lansingensis DSM 19556 = ATCC 49751 [JHWF]
117945
117869
-
Pro
CGG
[ENA]
¡û
>W141561512
JHYM01000008
Gammaproteobacteria
Legionella cherrii DSM 19213 [JHYM]
443682
443606
-
Pro
CGG
[ENA]
¡û
>C141003227
CP004006
Gammaproteobacteria
Legionella oakridgensis ATCC 33761 = DSM 21215 [CP004006]
1996579
1996655
+
Pro
CGG
[Ensembl]
¡û
>W1910729997
MHBD01000070
Gammaproteobacteria
Legionellales bacterium RIFCSPHIGHO2_12_FULL_42_9 [MHBD]
1372
1296
-
Pro
CGG
[ENA]
¡û
>W10107364
ACZG01000002
Gammaproteobacteria
Legionella longbeachae D-4968 [ACZG]
293047
292971
-
Pro
CGG
[ENA]
¡û
>C10108667
FN650140
Gammaproteobacteria
Legionella longbeachae NSW150 [FN650140]
3132903
3132979
+
Pro
CGG
[Ensembl]
¡û
>W11109653
ACZG01000002
Gammaproteobacteria
Legionella longbeachae D-4968 [ACZG]
293047
292971
-
Pro
CGG
[ENA]
¡û
>W1511220156
JNCF01000024
Gammaproteobacteria
Legionella norrlandica LEGN [JNCF]
4846
4922
+
Pro
CGG
[ENA]
¡û
>W1610580162
LBAY01000009
Gammaproteobacteria
Fluoribacter gormanii [LBAY]
263218
263142
-
Pro
CGG
[ENA]
¡û
>W1610583878
LBHK01000003
Gammaproteobacteria
Legionella feeleii [LBHK]
162112
162188
+
Pro
CGG
[ENA]
¡û
>W1610584581
LCUA01000001
Gammaproteobacteria
Legionella oakridgensis [LCUA]
181031
181107
+
Pro
CGG
[ENA]
¡û
>W1610584622
LCUB01000001
Gammaproteobacteria
Legionella micdadei [LCUB]
397571
397647
+
Pro
CGG
[ENA]
¡û
>W1610760524
LNKA01000001
Gammaproteobacteria
Legionella adelaidensis [LNKA]
291774
291698
-
Pro
CGG
[ENA]
¡û
>W1610777470
LNXT01000009
Gammaproteobacteria
Legionella birminghamensis [LNXT]
54714
54790
+
Pro
CGG
[ENA]
¡û
>W1610777566
LNXV01000033
Gammaproteobacteria
Legionella brunensis [LNXV]
84797
84873
+
Pro
CGG
[ENA]
¡û
>W1610777597
LNXW01000009
Gammaproteobacteria
Legionella cherrii [LNXW]
427341
427265
-
Pro
CGG
[ENA]
¡û
>W1610777815
LNYB01000081
Gammaproteobacteria
Legionella feeleii [LNYB]
244911
244987
+
Pro
CGG
[ENA]
¡û
>W1610777875
LNYD01000001
Gammaproteobacteria
Fluoribacter gormanii [LNYD]
16104
16180
+
Pro
CGG
[ENA]
¡û
>W1610777943
LNYE01000029
Gammaproteobacteria
Legionella gratiana [LNYE]
270344
270268
-
Pro
CGG
[ENA]
¡û
>W1610777984
LNYF01000020
Gammaproteobacteria
Legionella hackeliae [LNYF]
732409
732333
-
Pro
CGG
[ENA]
¡û
>W1610778020
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
2028089
2028013
-
Pro
CGG
[ENA]
¡û
>W1610778058
LNYH01000137
Gammaproteobacteria
Legionella israelensis [LNYH]
12854
12778
-
Pro
CGG
[ENA]
¡û
>W1610778071
LNYI01000011
Gammaproteobacteria
Legionella lansingensis [LNYI]
87104
87180
+
Pro
CGG
[ENA]
¡û
>W1610778236
LNYM01000004
Gammaproteobacteria
Legionella micdadei [LNYM]
44720
44796
+
Pro
CGG
[ENA]
¡û
>W1610778389
LNYP01000031
Gammaproteobacteria
Legionella oakridgensis [LNYP]
124137
124061
-
Pro
CGG
[ENA]
¡û
>W1610778655
LNYW01000042
Gammaproteobacteria
Legionella shakespearei DSM 23087 [LNYW]
12955
13031
+
Pro
CGG
[ENA]
¡û
>W1610778734
LNYY01000019
Gammaproteobacteria
Legionella steelei [LNYY]
1072479
1072555
+
Pro
CGG
[ENA]
¡û
>W1611017204
LYOZ01000052
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
310199
310275
+
Pro
CGG
[ENA]
¡û
>W1710507473
FMVH01000033
Gammaproteobacteria
Legionella israelensis DSM 19235 [FMVH]
17606
17682
+
Pro
CGG
[ENA]
¡û
>W1710597823
FTNL01000002
Gammaproteobacteria
Fluoribacter gormanii [FTNL]
264343
264267
-
Pro
CGG
[ENA]
¡û
>W1710699174
LBAY01000009
Gammaproteobacteria
Fluoribacter gormanii [LBAY]
263218
263142
-
Pro
CGG
[ENA]
¡û
>W1710703026
LBHK01000003
Gammaproteobacteria
Legionella feeleii [LBHK]
162112
162188
+
Pro
CGG
[ENA]
¡û
>W1710703772
LCUA01000001
Gammaproteobacteria
Legionella oakridgensis [LCUA]
181031
181107
+
Pro
CGG
[ENA]
¡û
>W1710703813
LCUB01000001
Gammaproteobacteria
Legionella micdadei [LCUB]
397571
397647
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK