This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175661 (72 seq.)
>W1711680597
MRWM01000932
Gammaproteobacteria
Pseudomonas sp. BIN4 [MRWM]
1039
963
-
Arg
ACG
[ENA]
¡û
>W1711797861
MWUC01000027
Gammaproteobacteria
Morganella morganii [MWUC]
59410
59486
+
Arg
ACG
[ENA]
¡û
>W1711797862
MWUC01000027
Gammaproteobacteria
Morganella morganii [MWUC]
59579
59655
+
Arg
ACG
[ENA]
¡û
>W1711797863
MWUC01000027
Gammaproteobacteria
Morganella morganii [MWUC]
59708
59784
+
Arg
ACG
[ENA]
¡û
>W1711797864
MWUC01000027
Gammaproteobacteria
Morganella morganii [MWUC]
59809
59885
+
Arg
ACG
[ENA]
¡û
>W131211355
ATMJ01000013
Gammaproteobacteria
Tatumella ptyseos ATCC 33301 [ATMJ]
156214
156290
+
Arg
ACG
[ENA]
¡û
>C171039454
CP015581
Gammaproteobacteria
Tatumella citrea ATCC 39140 [CP015581]
1048925
1049001
+
Arg
ACG
-
¡û
>C171039455
CP015581
Gammaproteobacteria
Tatumella citrea ATCC 39140 [CP015581]
1049122
1049198
+
Arg
ACG
-
¡û
>C171039457
CP015581
Gammaproteobacteria
Tatumella citrea ATCC 39140 [CP015581]
1049378
1049454
+
Arg
ACG
-
¡û
>WENV180104509
OAPC01016869
[OAPC] marine metagenome; na
715
639
-
Arg
ACG
[ENA]
¢þ
>w002060
AAAU03000002
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAAU]
84829
84907
+
Arg
ACG
[ENA]
¡û
>WENV180497288
OCAE01000806
[OCAE] human gut metagenome; faeces
76
152
+
Arg
ACG
[ENA]
¢þ
>WENV180497469
OCAE01002994
[OCAE] human gut metagenome; faeces
352
276
-
Arg
ACG
[ENA]
¢þ
>WENV180497470
OCAE01002994
[OCAE] human gut metagenome; faeces
183
107
-
Arg
ACG
[ENA]
¢þ
>W141212987
AZRH01000016
Gammaproteobacteria
Morganella sp. EGD-HP17 [AZRH]
21225
21149
-
Arg
ACG
[ENA]
¡û
>W141212988
AZRH01000016
Gammaproteobacteria
Morganella sp. EGD-HP17 [AZRH]
21056
20980
-
Arg
ACG
[ENA]
¡û
>W141212989
AZRH01000016
Gammaproteobacteria
Morganella sp. EGD-HP17 [AZRH]
20927
20851
-
Arg
ACG
[ENA]
¡û
>W141212990
AZRH01000016
Gammaproteobacteria
Morganella sp. EGD-HP17 [AZRH]
20826
20750
-
Arg
ACG
[ENA]
¡û
>WENV182521629
OIWQ01022741
[OIWQ] human gut metagenome; faeces
92
168
+
Arg
ACG
[ENA]
¢þ
>WENV182545243
OJBN01000185
[OJBN] seawater metagenome; Sea water
16975
17051
+
Arg
ACG
[ENA]
¢þ
>WENV182556190
OJDG01001230
[OJDG] seawater metagenome; Sea water
305
229
-
Arg
ACG
[ENA]
¢þ
>WENV183066752
OLIL01000889
[OLIL] metagenome; faeces
5670
5594
-
Arg
ACG
[ENA]
¢þ
>WENV183066753
OLIL01000889
[OLIL] metagenome; faeces
5501
5425
-
Arg
ACG
[ENA]
¢þ
>WENV183066754
OLIL01000889
[OLIL] metagenome; faeces
5372
5296
-
Arg
ACG
[ENA]
¢þ
>WENV183066755
OLIL01000889
[OLIL] metagenome; faeces
5271
5195
-
Arg
ACG
[ENA]
¢þ
>WENV170706057
LNAP01001018
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
206
282
+
Arg
ACG
[ENA]
¢þ
>WENV170706058
LNAP01001018
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
347
423
+
Arg
ACG
[ENA]
¢þ
>W141464019
JFJX01000049
Gammaproteobacteria
Tatumella sp. UCD-D_suzukii [JFJX]
97190
97114
-
Arg
ACG
[ENA]
¡û
>C181123731
CP025933
Gammaproteobacteria
Morganella morganii KC-Tt-01 [CP025933]
911579
911655
+
Arg
ACG
-
¡û
>C181123732
CP025933
Gammaproteobacteria
Morganella morganii KC-Tt-01 [CP025933]
911748
911824
+
Arg
ACG
-
¡û
>C181123733
CP025933
Gammaproteobacteria
Morganella morganii KC-Tt-01 [CP025933]
911877
911953
+
Arg
ACG
-
¡û
>C181123734
CP025933
Gammaproteobacteria
Morganella morganii KC-Tt-01 [CP025933]
911978
912054
+
Arg
ACG
-
¡û
>C181217598
LS483499
Gammaproteobacteria
Tatumella ptyseos NCTC11468 [LS483499]
896959
897035
+
Arg
ACG
-
¡û
>C191193616
LR133904
Gammaproteobacteria
Morganella morganii NCTC235 [LR133904]
2875326
2875250
-
Arg
ACG
-
¡û
>C191193617
LR133904
Gammaproteobacteria
Morganella morganii NCTC235 [LR133904]
2875156
2875080
-
Arg
ACG
-
¡û
>C191193618
LR133904
Gammaproteobacteria
Morganella morganii NCTC235 [LR133904]
2875027
2874951
-
Arg
ACG
-
¡û
>W141710955
JMPR01000046
Gammaproteobacteria
Tatumella ptyseos ATCC 33301 [JMPR]
91389
91313
-
Arg
ACG
[ENA]
¡û
>W09102098
AAHH01000002
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAHH]
84830
84906
+
Arg
ACG
[ENA]
¡û
>C09100911
CP001157
Gammaproteobacteria
Azotobacter vinelandii DJ DJ; ATCC BAA-1303 [CP001157]
3517450
3517374
-
Arg
ACG
[Ensembl]
¡û
>C09103164
CP001277
Gammaproteobacteria
Candidatus Hamiltonella defensa 5AT [Acyrthosiphon pisum] T5A [CP001277]
13102
13178
+
Arg
ACG
[Ensembl]
¡û
>C141003709
CP004345
Gammaproteobacteria
Morganella morganii subsp. morganii KT [CP004345]
1472418
1472494
+
Arg
ACG
[Ensembl]
¡û
>C141003710
CP004345
Gammaproteobacteria
Morganella morganii subsp. morganii KT [CP004345]
1472587
1472663
+
Arg
ACG
[Ensembl]
¡û
>C141003711
CP004345
Gammaproteobacteria
Morganella morganii subsp. morganii KT [CP004345]
1472716
1472792
+
Arg
ACG
[Ensembl]
¡û
>C141003712
CP004345
Gammaproteobacteria
Morganella morganii subsp. morganii KT [CP004345]
1472817
1472893
+
Arg
ACG
[Ensembl]
¡û
>W1910635630
LNJW01000025
Gammaproteobacteria
Candidatus Hamiltonella defensa [LNJW]
65114
65190
+
Arg
ACG
[ENA]
¡û
>W1810173804
PJNJ01000011
Gammaproteobacteria
Morganella morganii FAM24091 [PJNJ]
20246
20170
-
Arg
ACG
[ENA]
¡û
>W1810190218
PKJR01000003
Gammaproteobacteria
Morganella morganii UMB1297 [PKJR]
21427
21351
-
Arg
ACG
[ENA]
¡û
>W1810190219
PKJR01000003
Gammaproteobacteria
Morganella morganii UMB1297 [PKJR]
21178
21102
-
Arg
ACG
[ENA]
¡û
>W1810190220
PKJR01000003
Gammaproteobacteria
Morganella morganii UMB1297 [PKJR]
21009
20933
-
Arg
ACG
[ENA]
¡û
>W1511304542
JPKR02000004
Gammaproteobacteria
Tatumella morbirosei LMG 23360 [JPKR]
568112
568188
+
Arg
ACG
[ENA]
¡û
>W1511304544
JPKR02000004
Gammaproteobacteria
Tatumella morbirosei LMG 23360 [JPKR]
568396
568472
+
Arg
ACG
[ENA]
¡û
>W1511304545
JPKR02000004
Gammaproteobacteria
Tatumella morbirosei LMG 23360 [JPKR]
568590
568666
+
Arg
ACG
[ENA]
¡û
>W1511304547
JPKR02000004
Gammaproteobacteria
Tatumella morbirosei LMG 23360 [JPKR]
568844
568920
+
Arg
ACG
[ENA]
¡û
>W1511565717
LAGC01000007
Gammaproteobacteria
Morganella morganii 8066 [LAGC]
22067
21991
-
Arg
ACG
[ENA]
¡û
>W1511565718
LAGC01000007
Gammaproteobacteria
Morganella morganii 8066 [LAGC]
21898
21822
-
Arg
ACG
[ENA]
¡û
>W1511565719
LAGC01000007
Gammaproteobacteria
Morganella morganii 8066 [LAGC]
21766
21690
-
Arg
ACG
[ENA]
¡û
>W1511565720
LAGC01000007
Gammaproteobacteria
Morganella morganii 8066 [LAGC]
21665
21589
-
Arg
ACG
[ENA]
¡û
>W1511638118
LDNQ01000515
Gammaproteobacteria
Morganella morganii SA36 [LDNQ]
678
754
+
Arg
ACG
[ENA]
¡û
>W1511638119
LDNQ01000515
Gammaproteobacteria
Morganella morganii SA36 [LDNQ]
847
923
+
Arg
ACG
[ENA]
¡û
>W1511638120
LDNQ01000515
Gammaproteobacteria
Morganella morganii SA36 [LDNQ]
976
1052
+
Arg
ACG
[ENA]
¡û
>W1511638121
LDNQ01000515
Gammaproteobacteria
Morganella morganii SA36 [LDNQ]
1077
1153
+
Arg
ACG
[ENA]
¡û
>W1610070285
BCTD01000016
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
124
200
+
Arg
ACG
[ENA]
¡û
>W121063707
AJLH01000077
Gammaproteobacteria
Candidatus Hamiltonella defensa defensa MED (Bemisia tabaci) [AJLH]
1502
1426
-
Arg
ACG
[ENA]
¡û
>C131014984
CP005095
Gammaproteobacteria
Azotobacter vinelandii CA6 [CP005095]
3517449
3517373
-
Arg
ACG
[Ensembl]
¡û
>W1710067658
BCTD01000016
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
124
200
+
Arg
ACG
[ENA]
¡û
>W1710516725
FNCT01000013
Gammaproteobacteria
Pseudomonas benzenivorans [FNCT]
30891
30967
+
Arg
ACG
[ENA]
¡û
>W1710541856
FNYQ01000070
Gammaproteobacteria
Azotobacter beijerinckii [FNYQ]
19849
19925
+
Arg
ACG
[ENA]
¡û
>W1710542488
FNZE01000015
Gammaproteobacteria
Pseudomonas linyingensis [FNZE]
92551
92627
+
Arg
ACG
[ENA]
¡û
>W1710542489
FNZE01000015
Gammaproteobacteria
Pseudomonas linyingensis [FNZE]
92693
92769
+
Arg
ACG
[ENA]
¡û
>W1710573444
FOXM01000010
Gammaproteobacteria
Pseudomonas sagittaria [FOXM]
61033
60957
-
Arg
ACG
[ENA]
¡û
>W1710573445
FOXM01000010
Gammaproteobacteria
Pseudomonas sagittaria [FOXM]
60891
60815
-
Arg
ACG
[ENA]
¡û
>W1710581961
FPKM01000004
Gammaproteobacteria
Azotobacter vinelandii [FPKM]
115079
115155
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK