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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175744 (37 seq.)
>W1711577313
MNPS01000002
Alphaproteobacteria
Saccharibacter sp. M18 [MNPS]
344814
344738
-
Arg
TCT
[ENA]
¡û
>W1711577366
MNPT01000003
Alphaproteobacteria
Saccharibacter sp. 3.A.1 [MNPT]
322455
322379
-
Arg
TCT
[ENA]
¡û
>C171109006
CP020554
Alphaproteobacteria
Parasaccharibacter apium G7_7_3c [CP020554]
1911737
1911661
-
Arg
TCT
-
¡û
>W131176019
ARJS01000033
Alphaproteobacteria
Saccharibacter floricola DSM 15669 [ARJS]
8097
8021
-
Arg
TCT
[ENA]
¡û
>W141082067
ATSX01000001
Alphaproteobacteria
Commensalibacter papalotli (ex Servin-Garciduenas et al. 2014) MX01 [ATSX]
916894
916970
+
Arg
TCT
[ENA]
¡û
>W141247982
CBLY010000006
Alphaproteobacteria
Parasaccharibacter apium AM169 [CBLY]
30452
30528
+
Arg
TCT
[ENA]
¡û
>WENV170669477
LAHS01000332
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
152987
152911
-
Arg
TCT
[ENA]
¢þ
>C191002714
AP018515
Alphaproteobacteria
Acetobacter orientalis FAN1 [AP018515]
800822
800746
-
Arg
TCT
-
¡û
>C191100506
CP033087
Alphaproteobacteria
Commensalibacter melissae AMU001 [CP033087]
1154924
1154999
+
Arg
TCT
-
¡û
>C191157843
CP038141
Alphaproteobacteria
Swingsia samuiensis AH83 [CP038141]
189603
189527
-
Arg
TCT
-
¡û
>C191166474
CP039459
Alphaproteobacteria
Acetobacteraceae bacterium 880 [CP039459]
170010
169934
-
Arg
TCT
-
¡û
>C191166476
CP039459
Alphaproteobacteria
Acetobacteraceae bacterium 880 [CP039459]
169656
169580
-
Arg
TCT
-
¡û
>C191166533
CP039460
Alphaproteobacteria
Acetobacteraceae bacterium 868 [CP039460]
164351
164275
-
Arg
TCT
-
¡û
>C191166535
CP039460
Alphaproteobacteria
Acetobacteraceae bacterium 868 [CP039460]
164033
163957
-
Arg
TCT
-
¡û
>W1910007971
BDES01000049
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
276
200
-
Arg
TCT
[ENA]
¡û
>W1910182359
BJMV01000002
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
154838
154914
+
Arg
TCT
[ENA]
¡û
>W1910697249
MEJG01000004
Alphaproteobacteria
Parasaccharibacter apium AS1 [MEJG]
181814
181738
-
Arg
TCT
[ENA]
¡û
>W1810044968
LMYH01000001
Alphaproteobacteria
Parasaccharibacter apium A29 [LMYH]
53503
53427
-
Arg
TCT
[ENA]
¡û
>W1810045048
LMYI01000010
Alphaproteobacteria
Parasaccharibacter apium B8 [LMYI]
30621
30697
+
Arg
TCT
[ENA]
¡û
>W1810045115
LMYJ01000017
Alphaproteobacteria
Parasaccharibacter apium C6 [LMYJ]
30604
30680
+
Arg
TCT
[ENA]
¡û
>W1810604010
QGLT01000001
Alphaproteobacteria
Commensalibacter melissae ESL0284 [QGLT]
162207
162282
+
Arg
TCT
[ENA]
¡û
>W11179013
AGFR01000003
Alphaproteobacteria
Commensalibacter intestini A911 [AGFR]
929163
929239
+
Arg
TCT
[ENA]
¡û
>W1610040766
BAMV01000036
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
19664
19740
+
Arg
TCT
[ENA]
¡û
>W1610040786
BAMW01000015
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
6957
7033
+
Arg
TCT
[ENA]
¡û
>W1610040825
BAMX01000006
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
59207
59283
+
Arg
TCT
[ENA]
¡û
>W1610076841
BCZB01000004
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
40295
40371
+
Arg
TCT
[ENA]
¡û
>W1710037964
BAMV01000036
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
19664
19740
+
Arg
TCT
[ENA]
¡û
>W1710037984
BAMW01000015
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
6957
7033
+
Arg
TCT
[ENA]
¡û
>W1710038023
BAMX01000006
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
59207
59283
+
Arg
TCT
[ENA]
¡û
>W1710074530
BCZB01000004
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
40295
40371
+
Arg
TCT
[ENA]
¡û
>W1710613497
JATM01000001
Alphaproteobacteria
Bombella intestini [JATM]
619228
619152
-
Arg
TCT
[ENA]
¡û
>W1710624387
JOMP01000011
Alphaproteobacteria
Acetobacter indonesiensis [JOMP]
10905
10981
+
Arg
TCT
[ENA]
¡û
>W1710624449
JOMQ01000093
Alphaproteobacteria
Acetobacter cibinongensis DsW_47 [JOMQ]
7135
7211
+
Arg
TCT
[ENA]
¡û
>W1710624489
JOOY01000138
Alphaproteobacteria
Acetobacter orientalis [JOOY]
18139
18063
-
Arg
TCT
[ENA]
¡û
>W1710624542
JOPA01000006
Alphaproteobacteria
Acetobacter indonesiensis [JOPA]
119887
119811
-
Arg
TCT
[ENA]
¡û
>W1710624583
JOPB01000001
Alphaproteobacteria
Commensalibacter intestini [JOPB]
295312
295388
+
Arg
TCT
[ENA]
¡û
>W1710624926
JOPK01000016
Alphaproteobacteria
Acetobacter orientalis [JOPK]
4197
4273
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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