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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175913 (36 seq.)
>W1711096467
LTHT01000238
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
8799
8875
+
Arg
TCG
[ENA]
¡û
>WENV181428185
OGCU01003434
[OGCU] metagenome; Human gut stool
2208
2284
+
Arg
TCG
[ENA]
¢þ
>WENV181453526
OGEB01035705
[OGEB] metagenome; Human gut stool
322
398
+
Arg
TCG
[ENA]
¢þ
>WENV181458585
OGEK01000151
[OGEK] metagenome; Human gut stool
8833
8909
+
Arg
TCG
[ENA]
¢þ
>WENV181467379
OGER01003137
[OGER] metagenome; Human gut stool
394
318
-
Arg
TCG
[ENA]
¢þ
>WENV181474216
OGFC01003350
[OGFC] metagenome; Human gut stool
2374
2450
+
Arg
TCG
[ENA]
¢þ
>WENV181557984
OGIW01000970
[OGIW] metagenome; Human gut stool
5937
5861
-
Arg
TCG
[ENA]
¢þ
>WENV181560432
OGJC01000197
[OGJC] metagenome; Human gut stool
66944
66868
-
Arg
TCG
[ENA]
¢þ
>WENV181561410
OGJD01002049
[OGJD] metagenome; Human gut stool
467
391
-
Arg
TCG
[ENA]
¢þ
>WENV181580019
OGJZ01003383
[OGJZ] metagenome; Human gut stool
1018
942
-
Arg
TCG
[ENA]
¢þ
>WENV181627759
OGMN01005013
[OGMN] metagenome; Human gut stool
3754
3830
+
Arg
TCG
[ENA]
¢þ
>WENV181948341
OGZE01001599
[OGZE] human gut metagenome; faeces
3881
3805
-
Arg
TCG
[ENA]
¢þ
>WENV181960006
OGZN01009481
[OGZN] human gut metagenome; faeces
1104
1028
-
Arg
TCG
[ENA]
¢þ
>WENV181965541
OGZT01001215
[OGZT] human gut metagenome; faeces
9675
9599
-
Arg
TCG
[ENA]
¢þ
>WENV181970994
OGZY01000827
[OGZY] human gut metagenome; faeces
6991
6915
-
Arg
TCG
[ENA]
¢þ
>WENV181987083
OHAM01015439
[OHAM] human gut metagenome; faeces
92
16
-
Arg
TCG
[ENA]
¢þ
>WENV181994191
OHAS01014469
[OHAS] human gut metagenome; faeces
2410
2486
+
Arg
TCG
[ENA]
¢þ
>WENV182138614
OHKN01026648
[OHKN] human gut metagenome; feces
118
42
-
Arg
TCG
[ENA]
¢þ
>WENV182866599
OKRR01000579
[OKRR] human gut metagenome; faeces
31697
31621
-
Arg
TCG
[ENA]
¢þ
>WENV183290615
OLSH01000952
[OLSH] human gut metagenome; faeces
9889
9813
-
Arg
TCG
[ENA]
¢þ
>WENV183760819
PPYE01238928
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2358
2434
+
Arg
TCG
[ENA]
¢þ
>WENV183764066
PPYE01313219
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3352
3428
+
Arg
TCG
[ENA]
¢þ
>WENV183780594
PPYF01172461
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1087
1011
-
Arg
TCG
[ENA]
¢þ
>C181003937
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
2963018
2962942
-
Arg
TCG
-
¡û
>C181161035
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
301862
301786
-
Arg
TCG
-
¡û
>C181161052
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
2232721
2232797
+
Arg
TCG
-
¡û
>C181216748
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
681695
681771
+
Arg
TCG
-
¡û
>C191210206
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
525800
525876
+
Arg
TCG
-
¡û
>C191219253
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
412922
412998
+
Arg
TCG
-
¡û
>W09118770
ACDH01000032
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
8747
8823
+
Arg
TCG
[ENA]
¡û
>W09125159
ACIE01000007
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
68696
68620
-
Arg
TCG
[ENA]
¡û
>W1810791358
QRIG01000017
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
67532
67456
-
Arg
TCG
[ENA]
¡û
>W1810818381
QSDE01000008
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
109278
109354
+
Arg
TCG
[ENA]
¡û
>W1810832235
QSOW01000025
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
35425
35349
-
Arg
TCG
[ENA]
¡û
>W121021748
AGWJ01000040
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
12104
12028
-
Arg
TCG
[ENA]
¡û
>WENV085152
BABB01006810
Gut microbiome of Human (healthy human sample In-A, Adult, Male)
389
313
-
Arg
TCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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