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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176058 (41 seq.)
>W1710871530
LMLJ01000004
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
128266
128342
+
Met
CAT
[ENA]
¡û
>W1712081521
NHOF01000027
Gammaproteobacteria
Yersinia kristensenii [NHOF]
16736
16660
-
Met
CAT
[ENA]
¡û
>W1712110076
NJFR01000003
Gammaproteobacteria
Serratia odorifera [NJFR]
708753
708829
+
Met
CAT
[ENA]
¡û
>WENV181228918
OFEI01001170
[OFEI] insect metagenome; insect
1058
982
-
Ile2
CAT
[ENA]
¢þ
>WENV181232121
OFEL01023114
[OFEL] insect metagenome; insect
79
155
+
Ile2
CAT
[ENA]
¢þ
>WENV170707595
LNAP01026580
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3041
3117
+
Met
CAT
[ENA]
¢þ
>C181035782
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
4283031
4282955
-
Met
CAT
-
¡û
>C191087447
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
655100
655024
-
Met
CAT
-
¡û
>C191101660
CP033162
Gammaproteobacteria
Serratia sp. P2ACOL2 [CP033162]
1625855
1625931
+
Met
CAT
-
¡û
>C191101663
CP033162
Gammaproteobacteria
Serratia sp. P2ACOL2 [CP033162]
1750107
1750183
+
Met
CAT
-
¡û
>C191101668
CP033162
Gammaproteobacteria
Serratia sp. P2ACOL2 [CP033162]
1845772
1845848
+
Met
CAT
-
¡û
>C191126484
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
600874
600798
-
Met
CAT
-
¡û
>C191126560
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
601571
601495
-
Met
CAT
-
¡û
>C191126637
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
596123
596047
-
Met
CAT
-
¡û
>C191151798
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
3346719
3346643
-
Met
CAT
-
¡û
>C191195931
LR134117
Gammaproteobacteria
Serratia odorifera NCTC11214 [LR134117]
4736344
4736268
-
Met
CAT
-
¡û
>W141710748
JMPO01000133
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
73578
73654
+
Met
CAT
[ENA]
¡û
>W141816180
JQJR01000009
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
137451
137527
+
Met
CAT
[ENA]
¡û
>W1910584874
JYDE01000006
Gammaproteobacteria
Rahnella inusitata DSM 30078 [JYDE]
102712
102636
-
Met
CAT
[ENA]
¡û
>W1910584927
JYDF01000060
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
8298
8374
+
Met
CAT
[ENA]
¡û
>W1910584956
JYDG01000002
Gammaproteobacteria
Rahnella sp. AN3-3W3 [JYDG]
33501
33577
+
Met
CAT
[ENA]
¡û
>W1910655796
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
2821884
2821960
+
Met
CAT
[ENA]
¡û
>W1910696174
MEHU01000021
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
135335
135411
+
Met
CAT
[ENA]
¡û
>W1910750420
MJIB01000011
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
186697
186773
+
Met
CAT
[ENA]
¡û
>W1911239267
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
111112
111188
+
Met
CAT
[ENA]
¡û
>W1911686130
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
3936344
3936420
+
Met
CAT
[ENA]
¡û
>W1911693646
QLTF01000007
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
222277
222201
-
Met
CAT
[ENA]
¡û
>W1911744523
QVOO01000137
Gammaproteobacteria
Serratia odorifera KCTC 2937 [QVOO]
1964
1888
-
Met
CAT
[ENA]
¡û
>W1911824544
QZWI01000009
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
52505
52581
+
Met
CAT
[ENA]
¡û
>W1810150002
PITQ01000007
Gammaproteobacteria
Rahnella sp. AA [PITQ]
210785
210709
-
Met
CAT
[ENA]
¡û
>W1810239925
PPSR01000010
Gammaproteobacteria
Rahnella aquatilis DLL7529 [PPSR]
4780
4704
-
Met
CAT
[ENA]
¡û
>W10110463
ADBY01000058
Gammaproteobacteria
Serratia odorifera DSM 4582 [ADBY]
1838
1762
-
Met
CAT
[ENA]
¡û
>W1510456895
CPXJ01000063
Gammaproteobacteria
Yersinia enterocolitica IP05342 [CPXJ]
9602
9526
-
Met
CAT
[ENA]
¡û
>W1510462693
CQBM01000004
Gammaproteobacteria
Yersinia mollaretii FE82747 [CQBM]
231579
231655
+
Met
CAT
[ENA]
¡û
>W11112900
ADBY01000058
Gammaproteobacteria
Serratia odorifera DSM 4582 [ADBY]
1838
1762
-
Met
CAT
[ENA]
¡û
>C11118376
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
643081
643005
-
Met
CAT
[Ensembl]
¡û
>W1511433731
JUHL01000005
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
164605
164529
-
Met
CAT
[ENA]
¡û
>W1511433787
JUHM01000003
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
54535
54459
-
Met
CAT
[ENA]
¡û
>C121009669
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
668026
667950
-
Met
CAT
[Ensembl]
¡û
>C121012523
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
603905
603829
-
Met
CAT
[Ensembl]
¡û
>W1610733876
LMLJ01000004
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
128266
128342
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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