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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176138 (15 seq.)
>W1711136351
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
49491
49567
+
Met
CAT
[ENA]
¡û
>C171057219
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
855580
855504
-
Met
CAT
-
¡û
>C171118626
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
752143
752067
-
Met
CAT
-
¡û
>C181078351
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
756602
756526
-
Met
CAT
-
¡û
>W141814432
JQGK01000003
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
3698
3622
-
Met
CAT
[ENA]
¡û
>W09110073
ABUV01000001
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
106943
107019
+
Met
CAT
[ENA]
¡û
>C151018395
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
819507
819431
-
Met
CAT
[Ensembl]
¡û
>W1510014711
BBQE01000002
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
127765
127841
+
Met
CAT
[ENA]
¡û
>W1510014755
BBQF01000001
Campylobacterota
Sulfurospirillum arsenophilum NBRC 109478 [BBQF]
725659
725583
-
Met
CAT
[ENA]
¡û
>C10111336
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
633695
633619
-
Met
CAT
[Ensembl]
¡û
>W1511365457
JSEC01000001
Campylobacterota
Sulfurospirillum sp. MES [JSEC]
696103
696027
-
Met
CAT
[ENA]
¡û
>C121011183
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
661730
661654
-
Met
CAT
[Ensembl]
¡û
>C161001383
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
733592
733516
-
Met
CAT
-
¡û
>C161001408
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
2003596
2003672
+
Met
CAT
-
¡û
>W1610947471
LVAC01000023
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
49491
49567
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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