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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176146 (67 seq.)
>W1711126425
LUOO01000097
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
1231
1307
+
Met
CAT
[ENA]
¡û
>W1711126446
LUOP01000001
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
496458
496382
-
Met
CAT
[ENA]
¡û
>W1711642828
MPZQ01000001
Alphaproteobacteria
Thioclava sp. F28-4 [MPZQ]
430902
430826
-
Met
CAT
[ENA]
¡û
>W1711642881
MPZR01000003
Alphaproteobacteria
Thioclava sp. F36-7 [MPZR]
16528
16604
+
Met
CAT
[ENA]
¡û
>W1711642926
MPZS01000001
Alphaproteobacteria
Thioclava marina 11.10-0-13 [MPZS]
863925
863849
-
Met
CAT
[ENA]
¡û
>W1711642961
MPZT01000001
Alphaproteobacteria
Thioclava sp. DLFJ4-1 [MPZT]
462363
462287
-
Met
CAT
[ENA]
¡û
>W1711643008
MPZU01000001
Alphaproteobacteria
Thioclava sp. DLFJ5-1 [MPZU]
482886
482810
-
Met
CAT
[ENA]
¡û
>W1711643053
MPZV01000001
Alphaproteobacteria
Thioclava sediminum TAW-CT134 [MPZV]
543334
543258
-
Met
CAT
[ENA]
¡û
>W1711643100
MPZW01000001
Alphaproteobacteria
Thioclava sp. L04-15 [MPZW]
196
120
-
Met
CAT
[ENA]
¡û
>W1711643137
MPZX01000001
Alphaproteobacteria
Thioclava sp. F36-6 [MPZX]
1060700
1060776
+
Met
CAT
[ENA]
¡û
>W1711947186
NBNX01000001
Alphaproteobacteria
Thioclava sp. IC9 [NBNX]
1203845
1203769
-
Met
CAT
[ENA]
¡û
>W1711947238
NBNY01000001
Alphaproteobacteria
Thioclava sp. F1Mire-8 [NBNY]
1134583
1134507
-
Met
CAT
[ENA]
¡û
>W1711947280
NBNZ01000001
Alphaproteobacteria
Thioclava sp. F42-5 [NBNZ]
436394
436318
-
Met
CAT
[ENA]
¡û
>W1711947346
NBOA01000005
Alphaproteobacteria
Thioclava sp. F34-6 [NBOA]
388583
388507
-
Met
CAT
[ENA]
¡û
>W1711947385
NBOB01000004
Alphaproteobacteria
Thioclava sp. JM3 [NBOB]
374740
374664
-
Met
CAT
[ENA]
¡û
>W1711958982
NBXF01000001
Alphaproteobacteria
Thioclava electrotropha ElOx9 [NBXF]
191132
191208
+
Met
CAT
[ENA]
¡û
>w023642
AAYA01000010
Alphaproteobacteria
Sagittula stellata E-37 [AAYA]
72509
72587
+
Met
CAT
[ENA]
¡û
>w018802
AATQ01000006
Alphaproteobacteria
Salipiger bermudensis HTCC2601 [AATQ]
133793
133871
+
Met
CAT
[ENA]
¡û
>C171032461
CP014595
Alphaproteobacteria
Salipiger sp. CCB-MM3 [CP014595, CP014596]
87693
87617
-
Met
CAT
-
¡û
>C171094341
CP019437
Alphaproteobacteria
Thioclava nitratireducens 25B10_4 [CP019437]
1635828
1635904
+
Met
CAT
-
¡û
>W141020462
AJKJ01000028
Alphaproteobacteria
Citreicella sp. 357 [AJKJ]
482
406
-
Met
CAT
[ENA]
¡û
>WENV180395660
OBPT01067709
[OBPT] marine metagenome; ENVO:00002010 seawater
260
337
+
Ile2
CAT
[ENA]
¢þ
>W141082576
AUND01000001
Alphaproteobacteria
Thioclava pacifica DSM 10166 [AUND]
242570
242646
+
Met
CAT
[ENA]
¡û
>W141142912
AWRV01000362
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
9266
9342
+
Met
CAT
[ENA]
¡û
>WENV182585380
OJHH01014980
[OJHH] seawater metagenome; Sea water
192
268
+
Ile2
CAT
[ENA]
¢þ
>WENV183706228
PDWI01003526
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1499
1575
+
Ile2
CAT
[ENA]
¢þ
>WENV183748501
PPFU01046224
[PPFU] hypolithon metagenome; Antarctic Hypolithon
120
44
-
Ile2
CAT
[ENA]
¢þ
>WENV170014737
AYSL01008084
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
491
415
-
Met
CAT
[ENA]
¢þ
>WENV170485854
CEVN01144452
[CEVN] marine metagenome genome assembly TARA_142_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
81
157
+
Met
CAT
[ENA]
¢þ
>WENV170727345
LULE01000002
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
422562
422486
-
Met
CAT
[ENA]
¢þ
>WENV170739348
LULQ01000362
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
1231
1307
+
Met
CAT
[ENA]
¢þ
>WENV170759461
LUMS01024685
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
10
86
+
Met
CAT
[ENA]
¢þ
>WENV170761125
LUMU01010158
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
510
586
+
Met
CAT
[ENA]
¢þ
>WENV170810074
MDSW01142905
[MDSW] marine metagenome; seawater
11355
11431
+
Met
CAT
[ENA]
¢þ
>C181054570
CP021913
Alphaproteobacteria
Sagittula sp. P11 [CP021913]
4522622
4522698
+
Met
CAT
-
¡û
>C181060541
CP022189
Alphaproteobacteria
Alloyangia pacifica YSBP01 [CP022189, CP022190]
1433484
1433408
-
Met
CAT
-
¡û
>C181117200
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
1420358
1420282
-
Met
CAT
-
¡û
>C191131972
CP034810
Alphaproteobacteria
Paracoccus sp. Arc7-R13 [CP034810]
2496896
2496972
+
Met
CAT
-
¡û
>C191159602
CP038439
Alphaproteobacteria
Paracoccus liaowanqingii 2251 [CP038439]
864672
864596
-
Met
CAT
-
¡û
>W09132536
ACNW01000073
Alphaproteobacteria
Citreicella sp. SE45 [ACNW]
75095
75019
-
Met
CAT
[ENA]
¡û
>W1910499800
FXYF01000030
Alphaproteobacteria
Maliponia aquimaris CECT 8898 [FXYF]
25745
25669
-
Met
CAT
[ENA]
¡û
>W1911281159
NTHN01000134
Alphaproteobacteria
Alloyangia mangrovi SAOS 153D [NTHN]
5699
5775
+
Met
CAT
[ENA]
¡û
>W1911283629
NTJD01000003
Alphaproteobacteria
Pseudothioclava arenosa CAU 1312 [NTJD]
241922
241846
-
Met
CAT
[ENA]
¡û
>W1911575803
PDJO01000001
Alphaproteobacteria
Thioclava sp. ES.031 [PDJO]
1304939
1305015
+
Met
CAT
[ENA]
¡û
>W1911813214
QZEV01000103
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
2908
2984
+
Met
CAT
[ENA]
¡û
>W1810426257
PYWA01000004
Alphaproteobacteria
Paracoccus indicus IO390502 [PYWA]
342048
341972
-
Met
CAT
[ENA]
¡û
>W1810584533
QFBB01000005
Alphaproteobacteria
Thioclava sp. NG1 [QFBB]
351593
351517
-
Met
CAT
[ENA]
¡û
>W1810684492
QKYL01000125
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
25853
25929
+
Met
CAT
[ENA]
¡û
>W1810694759
QLMG01000057
Alphaproteobacteria
Salipiger aestuarii DSM 22011 [QLMG]
519
443
-
Met
CAT
[ENA]
¡û
>W1510013671
BBPH01000071
Alphaproteobacteria
Paracoccus sp. PAMC 22219 [BBPH]
5834
5910
+
Met
CAT
[ENA]
¡û
>W1511518714
JXYF01000068
Alphaproteobacteria
Paracoccus sp. S4493 [JXYF]
77
1
-
Met
CAT
[ENA]
¡û
>W1511526786
JYGY01000001
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
227838
227762
-
Met
CAT
[ENA]
¡û
>W1610091964
CXPG01000020
Alphaproteobacteria
Jannaschia rubra [CXPG]
732424
732500
+
Met
CAT
[ENA]
¡û
>W1610092915
CYSE01000002
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
586498
586422
-
Met
CAT
[ENA]
¡û
>W1610937358
LUOO01000097
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
1231
1307
+
Met
CAT
[ENA]
¡û
>W1610937379
LUOP01000001
Alphaproteobacteria
Maritimibacter sp. REDSEA-S40_B3 [LUOP]
496458
496382
-
Met
CAT
[ENA]
¡û
>W1610983596
LWER01000046
Alphaproteobacteria
Sulfitobacter sp. HI0027 HI0027 [LWER]
75271
75347
+
Met
CAT
[ENA]
¡û
>W1710095321
CXPG01000020
Alphaproteobacteria
Jannaschia rubra [CXPG]
732424
732500
+
Met
CAT
[ENA]
¡û
>W1710096170
CYSE01000002
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
586498
586422
-
Met
CAT
[ENA]
¡û
>W1710508086
FMVT01000004
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
141253
141329
+
Met
CAT
[ENA]
¡û
>W1710514279
FNAV01000010
Alphaproteobacteria
Salipiger thiooxidans [FNAV]
126803
126879
+
Met
CAT
[ENA]
¡û
>W1710516223
FNCL01000002
Alphaproteobacteria
Alloyangia pacifica [FNCL]
366262
366338
+
Met
CAT
[ENA]
¡û
>W1710543092
FNZQ01000004
Alphaproteobacteria
Jannaschia helgolandensis [FNZQ]
177799
177875
+
Met
CAT
[ENA]
¡û
>W1710553393
FOHO01000003
Alphaproteobacteria
Paracoccus homiensis [FOHO]
424728
424652
-
Met
CAT
[ENA]
¡û
>W1710562139
FOOS01000014
Alphaproteobacteria
Jannaschia rubra [FOOS]
3707
3783
+
Met
CAT
[ENA]
¡û
>W1710576216
FOZW01000001
Alphaproteobacteria
Alloyangia pacifica [FOZW]
670056
670132
+
Met
CAT
[ENA]
¡û
>W1710606558
FWXX01000002
Alphaproteobacteria
Tropicibacter naphthalenivorans [FWXX]
188142
188218
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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