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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176193 (54 seq.)
>W1710892679
LNDZ01000024
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
74581
74505
-
Gln
TTG
[ENA]
¡û
>W1711224655
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
640706
640630
-
Gln
TTG
[ENA]
¡û
>C171007971
CP011171
Betaproteobacteria
Bordetella pertussis E150 [CP011171]
722482
722558
+
Gln
TTG
-
¡û
>C171008521
CP011183
Betaproteobacteria
Bordetella pertussis H520 [CP011183]
721422
721498
+
Gln
TTG
-
¡û
>C171011750
CP011703
Betaproteobacteria
Bordetella pertussis H779 [CP011703]
720362
720438
+
Gln
TTG
-
¡û
>C171013200
CP011732
Betaproteobacteria
Bordetella pertussis I331 [CP011732]
722470
722546
+
Gln
TTG
-
¡û
>C171013874
CP011745
Betaproteobacteria
Bordetella pertussis I762 [CP011745]
3336227
3336151
-
Gln
TTG
-
¡û
>C171014174
CP011751
Betaproteobacteria
Bordetella pertussis J012 [CP011751]
3338329
3338253
-
Gln
TTG
-
¡û
>C171014424
CP011756
Betaproteobacteria
Bordetella pertussis J027 [CP011756]
3335178
3335102
-
Gln
TTG
-
¡û
>C171014624
CP011760
Betaproteobacteria
Bordetella pertussis J072 [CP011760]
3339383
3339307
-
Gln
TTG
-
¡û
>C171015424
CP012078
Betaproteobacteria
Bordetella pertussis H681 [CP012078]
721421
721497
+
Gln
TTG
-
¡û
>C171015746
CP012084
Betaproteobacteria
Bordetella pertussis I976 [CP012084]
3420114
3420038
-
Gln
TTG
-
¡û
>C171020533
CP013090
Betaproteobacteria
Bordetella pertussis J191 [CP013090]
721419
721495
+
Gln
TTG
-
¡û
>C171027685
CP013870
Betaproteobacteria
Bordetella pertussis F501 [CP013870]
720373
720449
+
Gln
TTG
-
¡û
>C171028359
CP013883
Betaproteobacteria
Bordetella pertussis I093 [CP013883]
3331389
3331313
-
Gln
TTG
-
¡û
>C171028606
CP013888
Betaproteobacteria
Bordetella pertussis J104 [CP013888]
3336217
3336141
-
Gln
TTG
-
¡û
>C171028759
CP013891
Betaproteobacteria
Bordetella pertussis J121 [CP013891]
3330985
3330909
-
Gln
TTG
-
¡û
>C171041403
CP015769
Betaproteobacteria
Bordetella pertussis VA-145 [CP015769]
3600607
3600531
-
Gln
TTG
-
¡û
>C171047650
CP016341
Betaproteobacteria
Bordetella holmesii H903 [CP016341]
2791891
2791815
-
Gln
TTG
-
¡û
>W131170293
ARFK01000004
Betaproteobacteria
Methylophilus sp. 1 [ARFK]
310126
310050
-
Gln
TTG
[ENA]
¡û
>WENV181187811
OEOE01000007
[OEOE] activated sludge metagenome; Activated Sludge
25686
25762
+
Gln
TTG
[ENA]
¢þ
>W141229536
BAMT01000004
Betaproteobacteria
Methylobacillus glycogenes JCM 2850 [BAMT]
121244
121168
-
Gln
TTG
[ENA]
¡û
>W141231907
BAUS01000002
Betaproteobacteria
Methylophilus sp. OH31 [BAUS]
306076
306000
-
Gln
TTG
[ENA]
¡û
>WENV183665442
ORJL010463536
[ORJL] groundwater metagenome; groundwater
1007
1083
+
Gln
TTG
[ENA]
¢þ
>WENV183726789
PJTO01000174
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
39207
39131
-
Gln
TTG
[ENA]
¢þ
>WENV183728000
PJTP01014499
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
496
572
+
Gln
TTG
[ENA]
¢þ
>WENV183728168
PJTP01053540
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
336
260
-
Gln
TTG
[ENA]
¢þ
>WENV183729394
PJTQ01034180
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
293
217
-
Gln
TTG
[ENA]
¢þ
>WENV183736753
PJUD01000014
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
249829
249753
-
Gln
TTG
[ENA]
¢þ
>WENV183739480
PJUE01022847
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
592
516
-
Gln
TTG
[ENA]
¢þ
>WENV170706154
LNAP01001399
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
53866
53942
+
Gln
TTG
[ENA]
¢þ
>WENV170709720
LNFM01000626
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10517
10593
+
Gln
TTG
[ENA]
¢þ
>WENV170710577
LNFM01002071
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
48977
49053
+
Gln
TTG
[ENA]
¢þ
>WENV170712237
LNFM01011179
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
15740
15816
+
Gln
TTG
[ENA]
¢þ
>WENV170712241
LNFM01011197
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
77
1
-
Gln
TTG
[ENA]
¢þ
>WENV170713065
LNFM01023255
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
15
91
+
Gln
TTG
[ENA]
¢þ
>WENV170714753
LNFM01098089
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1441
1365
-
Gln
TTG
[ENA]
¢þ
>C09107572
CP001674
Betaproteobacteria
Methylovorus glucosotrophus SIP3-4 [CP001674]
2140652
2140728
+
Gln
TTG
[Ensembl]
¡û
>C09107799
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
2001110
2001186
+
Gln
TTG
[Ensembl]
¡û
>W1911636089
PVTV01000013
Betaproteobacteria
Jezberella montanilacus MWH-P2sevCIIIb [PVTV]
118431
118353
-
Gln
TTG
[ENA]
¡û
>C151089474
CP012020
Betaproteobacteria
Methylophilus sp. TWE2 [CP012020]
891388
891312
-
Gln
TTG
[Ensembl]
¡û
>C151104090
LN794158
Betaproteobacteria
Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158]
361832
361756
-
Gln
TTG
[Ensembl]
¡û
>ENV09001597
ABSR01035182
Freshwater sediment metagenome lwMethylamine_C1
174
98
-
Gln
TTG
[ENA]
¡û
>C11114206
CP002252
Betaproteobacteria
Methylovorus sp. MP688 [CP002252]
2102582
2102658
+
Gln
TTG
[Ensembl]
¡û
>W1511433383
JUHE01000001
Betaproteobacteria
Methylophilus sp. Q8 [JUHE]
317470
317546
+
Gln
TTG
[ENA]
¡û
>W1511433543
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
2364339
2364263
-
Gln
TTG
[ENA]
¡û
>C161029061
CP010843
Betaproteobacteria
Bordetella pertussis H542 [CP010843]
741244
741320
+
Gln
TTG
-
¡û
>C161051077
CP013111
Betaproteobacteria
Bordetella sp. N [CP013111]
5944861
5944937
+
Gln
TTG
[Ensembl]
¡û
>WENV057499
AACY023296740
Marine microbial communities from Global Ocean Sampling (GOS)
905
829
-
Gln
TTG
[ENA]
>W1610077137
BCZH01000052
Betaproteobacteria
Bordetella pertussis NBRC 107857 [BCZH]
14888
14812
-
Gln
TTG
[ENA]
¡û
>W1610752945
LNDZ01000024
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
74581
74505
-
Gln
TTG
[ENA]
¡û
>W1611008619
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
640706
640630
-
Gln
TTG
[ENA]
¡û
>W1710074775
BCZH01000052
Betaproteobacteria
Bordetella pertussis NBRC 107857 [BCZH]
14888
14812
-
Gln
TTG
[ENA]
¡û
>W1710520767
FNFX01000001
Betaproteobacteria
Methylophilus rhizosphaerae [FNFX]
686450
686526
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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