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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176321 (68 seq.)
>W1710885355
LMXE01000004
Bacillota
Leuconostoc mesenteroides [LMXE]
222413
222340
-
Arg
TCT
[ENA]
¡û
>W1711617482
MPAM01000089
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAM]
713
640
-
Arg
TCT
[ENA]
¡û
>W1711617532
MPAN01000095
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAN]
713
640
-
Arg
TCT
[ENA]
¡û
>W1711617582
MPAO01000094
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAO]
560
487
-
Arg
TCT
[ENA]
¡û
>W1711617631
MPAP01000101
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAP]
2036
2109
+
Arg
TCT
[ENA]
¡û
>W1711617681
MPAQ01000090
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAQ]
841
768
-
Arg
TCT
[ENA]
¡û
>W1711617779
MPAS01000096
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAS]
292
219
-
Arg
TCT
[ENA]
¡û
>W1711617829
MPAT01000091
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAT]
560
487
-
Arg
TCT
[ENA]
¡û
>W1711622389
MPEB01000005
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEB]
585
512
-
Arg
TCT
[ENA]
¡û
>W1711622486
MPEC01000156
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEC]
2336
2409
+
Arg
TCT
[ENA]
¡û
>W1711622535
MPED01000088
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPED]
560
487
-
Arg
TCT
[ENA]
¡û
>W1711622632
MPEF01000101
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEF]
560
487
-
Arg
TCT
[ENA]
¡û
>W1711622681
MPEG01000086
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEG]
560
487
-
Arg
TCT
[ENA]
¡û
>W1711622730
MPEH01000089
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEH]
560
487
-
Arg
TCT
[ENA]
¡û
>W1711622779
MPEI01000091
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEI]
713
640
-
Arg
TCT
[ENA]
¡û
>W1711622830
MPEJ01000089
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEJ]
560
487
-
Arg
TCT
[ENA]
¡û
>W1711627182
MPLH01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLH]
6360
6433
+
Arg
TCT
[ENA]
¡û
>W1711627283
MPLI01000090
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPLI]
538
465
-
Arg
TCT
[ENA]
¡û
>W1711627334
MPLJ01000088
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLJ]
1038
965
-
Arg
TCT
[ENA]
¡û
>W1711627532
MPLO01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLO]
2375
2302
-
Arg
TCT
[ENA]
¡û
>W1711627591
MPLP01000003
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLP]
214382
214455
+
Arg
TCT
[ENA]
¡û
>W1711627638
MPLQ01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLQ]
42769
42696
-
Arg
TCT
[ENA]
¡û
>W1711627685
MPLR01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLR]
68245
68318
+
Arg
TCT
[ENA]
¡û
>C171019418
CP013016
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides DRC0211 [CP013016]
1240215
1240142
-
Arg
TCT
-
¡û
>C171032535
CP014611
Bacillota
Leuconostoc mesenteroides subsp. jonggajibkimchii DRC1506 [CP014611]
1209397
1209324
-
Arg
TCT
-
¡û
>C171037214
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
1271133
1271060
-
Arg
TCT
-
¡û
>C171038899
CP015442
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD1710 [CP015442]
1411336
1411263
-
Arg
TCT
-
¡û
>C171111828
CP020731
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides FM06 [CP020731]
1524605
1524678
+
Arg
TCT
-
¡û
>C012156
CP000414
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [CP000414]
1319719
1319646
-
Arg
TCT
[Ensembl]
¡û
>W141075597
ATAZ01000004
Bacillota
Leuconostoc mesenteroides subsp. cremoris TIFN8 [ATAZ]
2316
2389
+
Arg
TCT
[ENA]
¡û
>W141292185
JAUJ01000114
Bacillota
Leuconostoc mesenteroides subsp. cremoris T26 [JAUJ]
1896
1969
+
Arg
TCT
[ENA]
¡û
>WENV183511934
OMJG01016284
[OMJG] food metagenome; Cotija cheese
1060
1133
+
Arg
TCT
[ENA]
¢þ
>C181003771
AP017935
Bacillota
Leuconostoc suionicum LT-38 [AP017935]
1519414
1519341
-
Arg
TCT
-
¡û
>C181003835
AP017936
Bacillota
Leuconostoc mesenteroides LK-151 [AP017936]
1563485
1563412
-
Arg
TCT
-
¡û
>C181054939
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
1277732
1277659
-
Arg
TCT
-
¡û
>C191019056
CP021491
Bacillota
Leuconostoc mesenteroides WiKim33 [CP021491]
1861483
1861556
+
Arg
TCT
-
¡û
>C191135423
CP035139
Bacillota
Leuconostoc mesenteroides SRCM103356 [CP035139]
1219666
1219593
-
Arg
TCT
-
¡û
>C191137978
CP035271
Bacillota
Leuconostoc mesenteroides SRCM103453 [CP035271]
1329762
1329689
-
Arg
TCT
-
¡û
>C191146261
CP035746
Bacillota
Leuconostoc mesenteroides SRCM103460 [CP035746]
1269277
1269204
-
Arg
TCT
-
¡û
>W09100488
AABH02000004
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [AABH]
59045
59118
+
Arg
TCT
[ENA]
¡û
>W09127249
ACKV01000035
Bacillota
Leuconostoc mesenteroides subsp. cremoris ATCC 19254 [ACKV]
49053
48980
-
Arg
TCT
[ENA]
¡û
>W1910181179
BJLS01000006
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides NBRC 3832 [BJLS]
77084
77157
+
Arg
TCT
[ENA]
¡û
>W1910810851
MUXD01000071
Bacillota
Leuconostoc mesenteroides YL48 [MUXD]
4462
4535
+
Arg
TCT
[ENA]
¡û
>W1910870992
NCWT01000083
Bacillota
Leuconostoc mesenteroides OG2 [NCWT]
296
223
-
Arg
TCT
[ENA]
¡û
>W1911533335
OKQR01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8486 [OKQR]
248291
248364
+
Arg
TCT
[ENA]
¡û
>W1911533486
OKQU01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 9216 [OKQU]
373019
373092
+
Arg
TCT
[ENA]
¡û
>W1911533623
OKQW01000002
Bacillota
Leuconostoc mesenteroides CECT 9268 [OKQW]
263008
262935
-
Arg
TCT
[ENA]
¡û
>W1911533946
OKRL01000001
Bacillota
Leuconostoc mesenteroides CECT 9217 [OKRL]
1128524
1128451
-
Arg
TCT
[ENA]
¡û
>W1911538477
OMON01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8484 [OMON]
248159
248232
+
Arg
TCT
[ENA]
¡û
>W1911539186
OMPP01000002
Bacillota
Leuconostoc mesenteroides CECT 9266 [OMPP]
189687
189614
-
Arg
TCT
[ENA]
¡û
>W1810705436
QMJH01000015
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_608 [QMJH]
1151
1224
+
Arg
TCT
[ENA]
¡û
>W1810705472
QMJI01000003
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_609 [QMJI]
77120
77193
+
Arg
TCT
[ENA]
¡û
>W1810705544
QMJK01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_611 [QMJK]
77255
77328
+
Arg
TCT
[ENA]
¡û
>C151089436
CP012009
Bacillota
Leuconostoc mesenteroides subsp. dextranicum DSM 20484 [CP012009]
68558
68485
-
Arg
TCT
[Ensembl]
¡û
>W1510013862
BBPK01000002
Bacillota
Leuconostoc mesenteroides Wikim17 [BBPK]
3060
2987
-
Arg
TCT
[ENA]
¡û
>WENV11100250
AEKF01000001
Food metagenome, Jonggazip commercial cabbage kimchi
77124
77197
+
Arg
TCT
[ENA]
¡û
>W1511346264
JRGZ01000002
Bacillota
Leuconostoc mesenteroides P45 [JRGZ]
1064464
1064391
-
Arg
TCT
[ENA]
¡û
>W11141995
AEOQ01000248
Bacillota
Leuconostoc pseudomesenteroides KCTC 3652 [AEOQ]
458
385
-
Arg
TCT
[ENA]
¡û
>W1511585385
LAYN01000003
Bacillota
Leuconostoc mesenteroides subsp. dextranicum LbE15 [LAYN]
65940
66013
+
Arg
TCT
[ENA]
¡û
>W1511585736
LAYU01000060
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides LbE16 [LAYU]
866
793
-
Arg
TCT
[ENA]
¡û
>W1511585752
LAYV01000003
Bacillota
Leuconostoc mesenteroides subsp. cremoris LbT16 [LAYV]
89919
89846
-
Arg
TCT
[ENA]
¡û
>C121005823
CP003101
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides J18 [CP003101]
1216147
1216074
-
Arg
TCT
[Ensembl]
¡û
>C161074421
CP014610
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD3749 [CP014610]
1270411
1270338
-
Arg
TCT
-
¡û
>W1610061383
BCMO01000005
Bacillota
Leuconostoc mesenteroides [BCMO]
74455
74528
+
Arg
TCT
[ENA]
¡û
>W1610061424
BCMP01000010
Bacillota
Leuconostoc mesenteroides [BCMP]
101585
101658
+
Arg
TCT
[ENA]
¡û
>W1610747281
LMXE01000004
Bacillota
Leuconostoc mesenteroides [LMXE]
222413
222340
-
Arg
TCT
[ENA]
¡û
>W1710059048
BCMO01000005
Bacillota
Leuconostoc mesenteroides [BCMO]
74455
74528
+
Arg
TCT
[ENA]
¡û
>W1710059089
BCMP01000010
Bacillota
Leuconostoc mesenteroides [BCMP]
101585
101658
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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