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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176325 (96 seq.)
>W1710885344
LMXE01000002
Bacillota
Leuconostoc mesenteroides [LMXE]
320161
320235
+
Lys
TTT
[ENA]
¡û
>W1711612466
MOWQ01000001
Bacillota
Leuconostoc sp. BM2 [MOWQ]
176347
176273
-
Lys
TTT
[ENA]
¡û
>W1711617393
MPAL01000002
Bacillota
Leuconostoc pseudomesenteroides [MPAL]
69713
69787
+
Lys
TTT
[ENA]
¡û
>W1711617472
MPAM01000030
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAM]
11505
11431
-
Lys
TTT
[ENA]
¡û
>W1711617518
MPAN01000026
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAN]
9818
9892
+
Lys
TTT
[ENA]
¡û
>W1711617568
MPAO01000027
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAO]
11505
11431
-
Lys
TTT
[ENA]
¡û
>W1711617619
MPAP01000044
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAP]
1295
1369
+
Lys
TTT
[ENA]
¡û
>W1711617669
MPAQ01000027
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAQ]
9094
9168
+
Lys
TTT
[ENA]
¡û
>W1711617690
MPAR01000004
Bacillota
Leuconostoc pseudomesenteroides [MPAR]
69713
69787
+
Lys
TTT
[ENA]
¡û
>W1711617766
MPAS01000028
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAS]
9073
9147
+
Lys
TTT
[ENA]
¡û
>W1711617818
MPAT01000029
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAT]
9071
9145
+
Lys
TTT
[ENA]
¡û
>W1711617865
MPAU01000028
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAU]
9071
9145
+
Lys
TTT
[ENA]
¡û
>W1711618114
MPBA01000001
Bacillota
Leuconostoc pseudomesenteroides [MPBA]
91359
91285
-
Lys
TTT
[ENA]
¡û
>W1711618164
MPBB01000001
Bacillota
Leuconostoc pseudomesenteroides [MPBB]
136375
136301
-
Lys
TTT
[ENA]
¡û
>W1711618212
MPBC01000001
Bacillota
Leuconostoc pseudomesenteroides [MPBC]
38494
38568
+
Lys
TTT
[ENA]
¡û
>W1711618261
MPBD01000001
Bacillota
Leuconostoc pseudomesenteroides [MPBD]
91359
91285
-
Lys
TTT
[ENA]
¡û
>W1711622353
MPEA01000052
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEA]
13230
13156
-
Lys
TTT
[ENA]
¡û
>W1711622420
MPEB01000089
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEB]
11546
11620
+
Lys
TTT
[ENA]
¡û
>W1711622523
MPED01000029
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPED]
9166
9240
+
Lys
TTT
[ENA]
¡û
>W1711622543
MPEE01000003
Bacillota
Leuconostoc pseudomesenteroides [MPEE]
69713
69787
+
Lys
TTT
[ENA]
¡û
>W1711622619
MPEF01000028
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEF]
9133
9207
+
Lys
TTT
[ENA]
¡û
>W1711622669
MPEG01000027
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEG]
9803
9877
+
Lys
TTT
[ENA]
¡û
>W1711622704
MPEH01000029
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEH]
9071
9145
+
Lys
TTT
[ENA]
¡û
>W1711622768
MPEI01000029
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEI]
9071
9145
+
Lys
TTT
[ENA]
¡û
>W1711622819
MPEJ01000030
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEJ]
9662
9736
+
Lys
TTT
[ENA]
¡û
>W1711624823
MPHN01000005
Bacillota
Leuconostoc pseudomesenteroides [MPHN]
69973
70047
+
Lys
TTT
[ENA]
¡û
>W1711624866
MPHO01000003
Bacillota
Leuconostoc pseudomesenteroides [MPHO]
35464
35538
+
Lys
TTT
[ENA]
¡û
>W1711624929
MPHP01000024
Bacillota
Leuconostoc pseudomesenteroides [MPHP]
7589
7515
-
Lys
TTT
[ENA]
¡û
>W1711624945
MPHQ01000001
Bacillota
Leuconostoc pseudomesenteroides [MPHQ]
91943
91869
-
Lys
TTT
[ENA]
¡û
>W1711625009
MPHR01000019
Bacillota
Leuconostoc pseudomesenteroides [MPHR]
15632
15706
+
Lys
TTT
[ENA]
¡û
>W1711625046
MPHS01000005
Bacillota
Leuconostoc pseudomesenteroides [MPHS]
69713
69787
+
Lys
TTT
[ENA]
¡û
>W1711625114
MPHT01000008
Bacillota
Leuconostoc pseudomesenteroides [MPHT]
30276
30202
-
Lys
TTT
[ENA]
¡û
>W1711625185
MPHU01000120
Bacillota
Leuconostoc pseudomesenteroides [MPHU]
3696
3770
+
Lys
TTT
[ENA]
¡û
>W1711627082
MPLF01000001
Bacillota
Leuconostoc pseudomesenteroides [MPLF]
176347
176273
-
Lys
TTT
[ENA]
¡û
>W1711627131
MPLG01000001
Bacillota
Leuconostoc pseudomesenteroides [MPLG]
44076
44150
+
Lys
TTT
[ENA]
¡û
>W1711627185
MPLH01000003
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLH]
3477
3551
+
Lys
TTT
[ENA]
¡û
>W1711627271
MPLI01000024
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPLI]
9570
9644
+
Lys
TTT
[ENA]
¡û
>W1711627332
MPLJ01000052
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLJ]
3539
3465
-
Lys
TTT
[ENA]
¡û
>W1711627335
MPLK01000001
Bacillota
Leuconostoc pseudomesenteroides [MPLK]
44075
44149
+
Lys
TTT
[ENA]
¡û
>W1711627434
MPLM01000001
Bacillota
Leuconostoc pseudomesenteroides [MPLM]
44076
44150
+
Lys
TTT
[ENA]
¡û
>W1711627540
MPLO01000004
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLO]
198911
198837
-
Lys
TTT
[ENA]
¡û
>W1711627586
MPLP01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLP]
198911
198837
-
Lys
TTT
[ENA]
¡û
>W1711627631
MPLQ01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLQ]
30657
30731
+
Lys
TTT
[ENA]
¡û
>W1711627688
MPLR01000005
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLR]
26155
26229
+
Lys
TTT
[ENA]
¡û
>W1711627732
MPLS01000001
Bacillota
Leuconostoc pseudomesenteroides [MPLS]
30168
30094
-
Lys
TTT
[ENA]
¡û
>C171019397
CP013016
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides DRC0211 [CP013016]
472145
472219
+
Lys
TTT
-
¡û
>C171032514
CP014611
Bacillota
Leuconostoc mesenteroides subsp. jonggajibkimchii DRC1506 [CP014611]
471942
472016
+
Lys
TTT
-
¡û
>C171037193
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
470531
470605
+
Lys
TTT
-
¡û
>C171038878
CP015442
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD1710 [CP015442]
503746
503820
+
Lys
TTT
-
¡û
>C171111869
CP020731
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides FM06 [CP020731]
374922
374848
-
Lys
TTT
-
¡û
>C012135
CP000414
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [CP000414]
477234
477307
+
Lys
TTT
[Ensembl]
¡û
>W141075604
ATAZ01000042
Bacillota
Leuconostoc mesenteroides subsp. cremoris TIFN8 [ATAZ]
11775
11701
-
Lys
TTT
[ENA]
¡û
>W141244920
CAKV01000100
Bacillota
Leuconostoc pseudomesenteroides 4882 [CAKV]
36052
35978
-
Lys
TTT
[ENA]
¡û
>W141292103
JAUI01000010
Bacillota
Leuconostoc pseudomesenteroides 1159 [JAUI]
38582
38656
+
Lys
TTT
[ENA]
¡û
>W141292170
JAUJ01000008
Bacillota
Leuconostoc mesenteroides subsp. cremoris T26 [JAUJ]
9259
9333
+
Lys
TTT
[ENA]
¡û
>WENV183511495
OMJG01000468
[OMJG] food metagenome; Cotija cheese
7439
7513
+
Lys
TTT
[ENA]
¢þ
>W141402103
JDVA01000007
Bacillota
Leuconostoc pseudomesenteroides PS12 [JDVA]
136134
136060
-
Lys
TTT
[ENA]
¡û
>C181003759
AP017935
Bacillota
Leuconostoc suionicum LT-38 [AP017935]
717794
717868
+
Lys
TTT
-
¡û
>C181003822
AP017936
Bacillota
Leuconostoc mesenteroides LK-151 [AP017936]
707512
707586
+
Lys
TTT
-
¡û
>C181054918
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
471659
471733
+
Lys
TTT
-
¡û
>C191019097
CP021491
Bacillota
Leuconostoc mesenteroides WiKim33 [CP021491]
668612
668538
-
Lys
TTT
-
¡û
>C191135402
CP035139
Bacillota
Leuconostoc mesenteroides SRCM103356 [CP035139]
471659
471733
+
Lys
TTT
-
¡û
>C191137957
CP035271
Bacillota
Leuconostoc mesenteroides SRCM103453 [CP035271]
471660
471734
+
Lys
TTT
-
¡û
>C191146240
CP035746
Bacillota
Leuconostoc mesenteroides SRCM103460 [CP035746]
471655
471729
+
Lys
TTT
-
¡û
>W09127269
ACKV01000077
Bacillota
Leuconostoc mesenteroides subsp. cremoris ATCC 19254 [ACKV]
11374
11300
-
Lys
TTT
[ENA]
¡û
>W1910181163
BJLS01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides NBRC 3832 [BJLS]
76070
76144
+
Lys
TTT
[ENA]
¡û
>C141000446
CP000574
Bacillota
Leuconostoc mesenteroides KFRI-MG [CP000574]
471746
471820
+
Lys
TTT
[Ensembl]
¡û
>W1910810803
MUXD01000001
Bacillota
Leuconostoc mesenteroides YL48 [MUXD]
46153
46227
+
Lys
TTT
[ENA]
¡û
>W1910870948
NCWT01000003
Bacillota
Leuconostoc mesenteroides OG2 [NCWT]
5364
5438
+
Lys
TTT
[ENA]
¡û
>W1911533344
OKQR01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8486 [OKQR]
1030293
1030219
-
Lys
TTT
[ENA]
¡û
>W1911533495
OKQU01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 9216 [OKQU]
1155021
1154947
-
Lys
TTT
[ENA]
¡û
>W1911533617
OKQW01000001
Bacillota
Leuconostoc mesenteroides CECT 9268 [OKQW]
527465
527391
-
Lys
TTT
[ENA]
¡û
>W1911533938
OKRL01000001
Bacillota
Leuconostoc mesenteroides CECT 9217 [OKRL]
323863
323937
+
Lys
TTT
[ENA]
¡û
>W1911538486
OMON01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8484 [OMON]
1030161
1030087
-
Lys
TTT
[ENA]
¡û
>W1911539175
OMPP01000001
Bacillota
Leuconostoc mesenteroides CECT 9266 [OMPP]
323884
323958
+
Lys
TTT
[ENA]
¡û
>W1810573461
QEKT01000002
Bacillota
Convivina intestini DSM 28795 [QEKT]
243286
243212
-
Lys
TTT
[ENA]
¡û
>W1810705423
QMJH01000005
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_608 [QMJH]
29179
29105
-
Lys
TTT
[ENA]
¡û
>W1810705484
QMJI01000022
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_609 [QMJI]
11586
11660
+
Lys
TTT
[ENA]
¡û
>W1810705504
QMJJ01000001
Bacillota
Leuconostoc pseudomesenteroides KMB_610 [QMJJ]
145578
145652
+
Lys
TTT
[ENA]
¡û
>W1810705551
QMJK01000007
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_611 [QMJK]
109427
109501
+
Lys
TTT
[ENA]
¡û
>C151089410
CP012009
Bacillota
Leuconostoc mesenteroides subsp. dextranicum DSM 20484 [CP012009]
1182988
1183062
+
Lys
TTT
[Ensembl]
¡û
>W1510013871
BBPK01000006
Bacillota
Leuconostoc mesenteroides Wikim17 [BBPK]
29167
29093
-
Lys
TTT
[ENA]
¡û
>WENV11100280
AEKF01000009
Food metagenome, Jonggazip commercial cabbage kimchi
56388
56462
+
Lys
TTT
[ENA]
¡û
>W1511346257
JRGZ01000002
Bacillota
Leuconostoc mesenteroides P45 [JRGZ]
334323
334397
+
Lys
TTT
[ENA]
¡û
>W11141996
AEOQ01000426
Bacillota
Leuconostoc pseudomesenteroides KCTC 3652 [AEOQ]
1645
1719
+
Lys
TTT
[ENA]
¡û
>W1511585381
LAYN01000002
Bacillota
Leuconostoc mesenteroides subsp. dextranicum LbE15 [LAYN]
242311
242237
-
Lys
TTT
[ENA]
¡û
>W1511585692
LAYU01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides LbE16 [LAYU]
185816
185742
-
Lys
TTT
[ENA]
¡û
>W1511585746
LAYV01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris LbT16 [LAYV]
127304
127230
-
Lys
TTT
[ENA]
¡û
>C121005802
CP003101
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides J18 [CP003101]
471905
471979
+
Lys
TTT
[Ensembl]
¡û
>C161074400
CP014610
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD3749 [CP014610]
471773
471847
+
Lys
TTT
-
¡û
>W1610061375
BCMO01000001
Bacillota
Leuconostoc mesenteroides [BCMO]
204897
204971
+
Lys
TTT
[ENA]
¡û
>W1610061415
BCMP01000002
Bacillota
Leuconostoc mesenteroides [BCMP]
51586
51660
+
Lys
TTT
[ENA]
¡û
>W1610747270
LMXE01000002
Bacillota
Leuconostoc mesenteroides [LMXE]
320161
320235
+
Lys
TTT
[ENA]
¡û
>W1710059040
BCMO01000001
Bacillota
Leuconostoc mesenteroides [BCMO]
204897
204971
+
Lys
TTT
[ENA]
¡û
>W1710059080
BCMP01000002
Bacillota
Leuconostoc mesenteroides [BCMP]
51586
51660
+
Lys
TTT
[ENA]
¡û
>W1710510963
FMYJ01000002
Bacillota
Leuconostocaceae bacterium R-53105 [FMYJ]
38100
38174
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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