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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176326 (72 seq.)
>W1710885347
LMXE01000002
Bacillota
Leuconostoc mesenteroides [LMXE]
570211
570287
+
Met
CAT
[ENA]
¡û
>W1711617437
MPAM01000003
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAM]
2182
2258
+
Met
CAT
[ENA]
¡û
>W1711617491
MPAN01000005
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAN]
2054
2130
+
Met
CAT
[ENA]
¡û
>W1711617540
MPAO01000005
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAO]
1901
1977
+
Met
CAT
[ENA]
¡û
>W1711617627
MPAP01000070
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAP]
1957
2033
+
Met
CAT
[ENA]
¡û
>W1711617639
MPAQ01000004
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAQ]
2054
2130
+
Met
CAT
[ENA]
¡û
>W1711617732
MPAS01000003
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAS]
1860
1936
+
Met
CAT
[ENA]
¡û
>W1711617787
MPAT01000003
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAT]
1901
1977
+
Met
CAT
[ENA]
¡û
>W1711617832
MPAU01000003
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAU]
1881
1957
+
Met
CAT
[ENA]
¡û
>W1711622340
MPEA01000011
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEA]
1990
2066
+
Met
CAT
[ENA]
¡û
>W1711622391
MPEB01000017
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEB]
4325
4249
-
Met
CAT
[ENA]
¡û
>W1711622483
MPEC01000117
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEC]
396
472
+
Met
CAT
[ENA]
¡û
>W1711622493
MPED01000004
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPED]
1901
1977
+
Met
CAT
[ENA]
¡û
>W1711622614
MPEF01000014
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEF]
1901
1977
+
Met
CAT
[ENA]
¡û
>W1711622640
MPEG01000004
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEG]
1881
1957
+
Met
CAT
[ENA]
¡û
>W1711622689
MPEH01000004
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEH]
1901
1977
+
Met
CAT
[ENA]
¡û
>W1711622738
MPEI01000004
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEI]
2054
2130
+
Met
CAT
[ENA]
¡û
>W1711622789
MPEJ01000004
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEJ]
1901
1977
+
Met
CAT
[ENA]
¡û
>W1711627214
MPLH01000088
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLH]
3540
3616
+
Met
CAT
[ENA]
¡û
>W1711627242
MPLI01000004
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPLI]
55780
55704
-
Met
CAT
[ENA]
¡û
>W1711627291
MPLJ01000004
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLJ]
49888
49812
-
Met
CAT
[ENA]
¡û
>W1711627533
MPLO01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLO]
46785
46861
+
Met
CAT
[ENA]
¡û
>W1711627613
MPLP01000008
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLP]
46785
46861
+
Met
CAT
[ENA]
¡û
>W1711627634
MPLQ01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLQ]
280607
280683
+
Met
CAT
[ENA]
¡û
>W1711627683
MPLR01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLR]
108508
108584
+
Met
CAT
[ENA]
¡û
>C012138
CP000414
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [CP000414]
722634
722707
+
Met
CAT
[Ensembl]
¡û
>C171019400
CP013016
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides DRC0211 [CP013016]
717528
717604
+
Met
CAT
-
¡û
>C171032517
CP014611
Bacillota
Leuconostoc mesenteroides subsp. jonggajibkimchii DRC1506 [CP014611]
717291
717367
+
Met
CAT
-
¡û
>C171037196
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
714532
714608
+
Met
CAT
-
¡û
>C171038881
CP015442
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD1710 [CP015442]
750738
750814
+
Met
CAT
-
¡û
>C171111872
CP020731
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides FM06 [CP020731]
128913
128837
-
Met
CAT
-
¡û
>W141075600
ATAZ01000028
Bacillota
Leuconostoc mesenteroides subsp. cremoris TIFN8 [ATAZ]
56276
56200
-
Met
CAT
[ENA]
¡û
>W141292178
JAUJ01000021
Bacillota
Leuconostoc mesenteroides subsp. cremoris T26 [JAUJ]
1816
1892
+
Met
CAT
[ENA]
¡û
>WENV183511682
OMJG01001833
[OMJG] food metagenome; Cotija cheese
1964
2040
+
Ile2
CAT
[ENA]
¢þ
>C181003762
AP017935
Bacillota
Leuconostoc suionicum LT-38 [AP017935]
961791
961867
+
Met
CAT
-
¡û
>C181003825
AP017936
Bacillota
Leuconostoc mesenteroides LK-151 [AP017936]
957543
957619
+
Met
CAT
-
¡û
>C181054921
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
716834
716910
+
Met
CAT
-
¡û
>C191019100
CP021491
Bacillota
Leuconostoc mesenteroides WiKim33 [CP021491]
423240
423164
-
Met
CAT
-
¡û
>C191135405
CP035139
Bacillota
Leuconostoc mesenteroides SRCM103356 [CP035139]
717030
717106
+
Met
CAT
-
¡û
>C191137960
CP035271
Bacillota
Leuconostoc mesenteroides SRCM103453 [CP035271]
759285
759361
+
Met
CAT
-
¡û
>C191146243
CP035746
Bacillota
Leuconostoc mesenteroides SRCM103460 [CP035746]
717026
717102
+
Met
CAT
-
¡û
>W09100490
AABH02000005
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [AABH]
20285
20361
+
Met
CAT
[ENA]
¡û
>W09127265
ACKV01000066
Bacillota
Leuconostoc mesenteroides subsp. cremoris ATCC 19254 [ACKV]
55495
55419
-
Met
CAT
[ENA]
¡û
>W1910181166
BJLS01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides NBRC 3832 [BJLS]
321494
321570
+
Met
CAT
[ENA]
¡û
>C141000449
CP000574
Bacillota
Leuconostoc mesenteroides KFRI-MG [CP000574]
717140
717216
+
Met
CAT
[Ensembl]
¡û
>W1910810815
MUXD01000011
Bacillota
Leuconostoc mesenteroides YL48 [MUXD]
41413
41337
-
Met
CAT
[ENA]
¡û
>W1910870947
NCWT01000002
Bacillota
Leuconostoc mesenteroides OG2 [NCWT]
34791
34867
+
Met
CAT
[ENA]
¡û
>W1911533347
OKQR01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8486 [OKQR]
786293
786217
-
Met
CAT
[ENA]
¡û
>W1911533498
OKQU01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 9216 [OKQU]
911021
910945
-
Met
CAT
[ENA]
¡û
>W1911533620
OKQW01000001
Bacillota
Leuconostoc mesenteroides CECT 9268 [OKQW]
282066
281990
-
Met
CAT
[ENA]
¡û
>W1911533941
OKRL01000001
Bacillota
Leuconostoc mesenteroides CECT 9217 [OKRL]
569278
569354
+
Met
CAT
[ENA]
¡û
>W1911538489
OMON01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8484 [OMON]
786161
786085
-
Met
CAT
[ENA]
¡û
>W1911539178
OMPP01000001
Bacillota
Leuconostoc mesenteroides CECT 9266 [OMPP]
569283
569359
+
Met
CAT
[ENA]
¡û
>W1810705420
QMJH01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_608 [QMJH]
55566
55490
-
Met
CAT
[ENA]
¡û
>W1810705463
QMJI01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_609 [QMJI]
55535
55459
-
Met
CAT
[ENA]
¡û
>W1810705547
QMJK01000003
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_611 [QMJK]
46691
46767
+
Met
CAT
[ENA]
¡û
>C151089381
CP012009
Bacillota
Leuconostoc mesenteroides subsp. dextranicum DSM 20484 [CP012009]
746332
746405
+
Met
CAT
[Ensembl]
¡û
>C151089396
CP012009
Bacillota
Leuconostoc mesenteroides subsp. dextranicum DSM 20484 [CP012009]
849434
849507
+
Met
CAT
[Ensembl]
¡û
>C151089413
CP012009
Bacillota
Leuconostoc mesenteroides subsp. dextranicum DSM 20484 [CP012009]
1434633
1434709
+
Met
CAT
[Ensembl]
¡û
>W1510013887
BBPK01000021
Bacillota
Leuconostoc mesenteroides Wikim17 [BBPK]
220957
221033
+
Met
CAT
[ENA]
¡û
>WENV11100253
AEKF01000002
Food metagenome, Jonggazip commercial cabbage kimchi
112422
112498
+
Met
CAT
[ENA]
¡û
>W1511346260
JRGZ01000002
Bacillota
Leuconostoc mesenteroides P45 [JRGZ]
579609
579685
+
Met
CAT
[ENA]
¡û
>W1511585412
LAYN01000013
Bacillota
Leuconostoc mesenteroides subsp. dextranicum LbE15 [LAYN]
55597
55521
-
Met
CAT
[ENA]
¡û
>W1511585719
LAYU01000005
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides LbE16 [LAYU]
100564
100488
-
Met
CAT
[ENA]
¡û
>W1511585749
LAYV01000002
Bacillota
Leuconostoc mesenteroides subsp. cremoris LbT16 [LAYV]
117339
117415
+
Met
CAT
[ENA]
¡û
>C121005805
CP003101
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides J18 [CP003101]
717284
717360
+
Met
CAT
[Ensembl]
¡û
>C161074403
CP014610
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD3749 [CP014610]
717133
717209
+
Met
CAT
-
¡û
>W1610061380
BCMO01000004
Bacillota
Leuconostoc mesenteroides [BCMO]
146870
146946
+
Met
CAT
[ENA]
¡û
>W1610061419
BCMP01000005
Bacillota
Leuconostoc mesenteroides [BCMP]
116200
116124
-
Met
CAT
[ENA]
¡û
>W1610747273
LMXE01000002
Bacillota
Leuconostoc mesenteroides [LMXE]
570211
570287
+
Met
CAT
[ENA]
¡û
>W1710059045
BCMO01000004
Bacillota
Leuconostoc mesenteroides [BCMO]
146870
146946
+
Met
CAT
[ENA]
¡û
>W1710059084
BCMP01000005
Bacillota
Leuconostoc mesenteroides [BCMP]
116200
116124
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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