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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176328 (91 seq.)
>W1710923709
LOBU02000011
Actinomycetota
Amycolatopsis regifaucium [LOBU]
46735
46811
+
Arg
TCT
[ENA]
¡û
>W1710997828
LQCI01000017
Actinomycetota
Amycolatopsis regifaucium [LQCI]
46735
46811
+
Arg
TCT
[ENA]
¡û
>W1711004805
LQMT02000021
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
99877
99951
+
Arg
TCT
[ENA]
¡û
>W1711190866
LWSF01000037
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
24496
24572
+
Arg
TCT
[ENA]
¡û
>W1711343533
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
4872457
4872380
-
Arg
TCT
[ENA]
¡û
>W1711343641
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
3618856
3618782
-
Arg
TCT
[ENA]
¡û
>W1711427795
MIFY01000018
Actinomycetota
Pseudonocardia autotrophica [MIFY]
5783
5857
+
Arg
TCT
[ENA]
¡û
>W1711505762
MKVV01000010
Actinomycetota
Pseudonocardia sp. 73-21 [MKVV]
6369
6445
+
Arg
TCT
[ENA]
¡û
>W1711662707
MQUP01000032
Actinomycetota
Amycolatopsis keratiniphila subsp. nogabecina [MQUP]
24323
24249
-
Arg
TCT
[ENA]
¡û
>W1711662758
MQUQ01000020
Actinomycetota
Amycolatopsis coloradensis [MQUQ]
75139
75065
-
Arg
TCT
[ENA]
¡û
>W1711749284
MUMJ01000462
Actinomycetota
Amycolatopsis lexingtonensis [MUMJ]
6021
5945
-
Arg
TCT
[ENA]
¡û
>W1711749300
MUMK01000017
Actinomycetota
Amycolatopsis pretoriensis [MUMK]
29892
29968
+
Arg
TCT
[ENA]
¡û
>W1711765449
MUXN01000028
Actinomycetota
Amycolatopsis azurea DSM 43854 [MUXN]
69113
69039
-
Arg
TCT
[ENA]
¡û
>C171046299
CP016174
Actinomycetota
Amycolatopsis orientalis B-37 [CP016174]
7292920
7292994
+
Arg
TCT
-
¡û
>W131011166
AICY01000362
Actinomycetota
Saccharomonospora saliphila YIM 90502 [AICY]
20243
20169
-
Arg
TCT
[ENA]
¡û
>W131231287
AUII01000056
Actinomycetota
Pseudonocardia asaccharolytica DSM 44247 [AUII]
5573
5649
+
Arg
TCT
[ENA]
¡û
>W131011069
AICW01000276
Actinomycetota
Saccharomonospora iraqiensis IQ-H1 [AICW]
2927
2853
-
Arg
TCT
[ENA]
¡û
>W131011130
AICX01000415
Actinomycetota
Saccharomonospora halophila 8 [AICX]
702
776
+
Arg
TCT
[ENA]
¡û
>W131064606
ANMG01000017
Actinomycetota
Amycolatopsis azurea DSM 43854 [ANMG]
7234
7308
+
Arg
TCT
[ENA]
¡û
>W131091963
AOHO01000077
Actinomycetota
Amycolatopsis decaplanina DSM 44594 [AOHO]
69213
69139
-
Arg
TCT
[ENA]
¡û
>W131158765
AQUL01000001
Actinomycetota
Amycolatopsis methanolica 239 [AQUL]
3186590
3186516
-
Arg
TCT
[ENA]
¡û
>W131164023
ARAF01000001
Actinomycetota
Amycolatopsis alba DSM 44262 [ARAF]
381413
381487
+
Arg
TCT
[ENA]
¡û
>W131186176
ARVW01000001
Actinomycetota
Amycolatopsis nigrescens CSC17Ta-90 [ARVW]
727943
727867
-
Arg
TCT
[ENA]
¡û
>W131191632
ASJB01000086
Actinomycetota
Amycolatopsis orientalis DSM 40040 = KCTC 9412 [ASJB]
18798
18724
-
Arg
TCT
[ENA]
¡û
>W131202776
ASXG01000046
Actinomycetota
Amycolatopsis orientalis DSM 43388 [ASXG]
34215
34291
+
Arg
TCT
[ENA]
¡û
>W131202838
ASXH01000041
Actinomycetota
Amycolatopsis orientalis DSM 46075 [ASXH]
50762
50686
-
Arg
TCT
[ENA]
¡û
>WENV181189890
OEOF01301497
[OEOF] activated sludge metagenome; Activated Sludge
83
157
+
Arg
TCT
[ENA]
¢þ
>W141278058
JAFB01000011
Actinomycetota
Amycolatopsis taiwanensis DSM 45107 [JAFB]
59262
59188
-
Arg
TCT
[ENA]
¡û
>WENV170011620
APMI01077142
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
937
861
-
Arg
TCT
[ENA]
¢þ
>W141451912
JFBM01000019
Actinomycetota
Amycolatopsis lurida NRRL 2430 [JFBM]
70298
70224
-
Arg
TCT
[ENA]
¡û
>C181019538
CP016353
Actinomycetota
Prauserella marina DSM 45268 [CP016353]
1852799
1852725
-
Arg
TCT
-
¡û
>C181028418
CP017780
Actinomycetota
Amycolatopsis sp. BJA-103 [CP017780]
342537
342611
+
Arg
TCT
-
¡û
>C181107782
CP024894
Actinomycetota
Amycolatopsis sp. AA4 [CP024894]
5963849
5963923
+
Arg
TCT
-
¡û
>W141712008
JMQG01000051
Actinomycetota
Amycolatopsis mediterranei [JMQG]
32285
32361
+
Arg
TCT
[ENA]
¡û
>W141712163
JMQJ01000027
Actinomycetota
Amycolatopsis mediterranei [JMQJ]
10959
10883
-
Arg
TCT
[ENA]
¡û
>W141758913
JNYY01000003
Actinomycetota
Amycolatopsis vancoresmycina [JNYY]
21152
21076
-
Arg
TCT
[ENA]
¡û
>W141758994
JNYZ01000035
Actinomycetota
Amycolatopsis jejuensis [JNYZ]
13592
13516
-
Arg
TCT
[ENA]
¡û
>W141773717
JOIQ01000013
Actinomycetota
Streptomyces sp. NRRL F-3213 [JOIQ]
304811
304887
+
Arg
TCT
[ENA]
¡û
>W09120735
ACEV01000072
Actinomycetota
Streptomyces sp. AA4 [ACEV]
25474
25550
+
Arg
TCT
[ENA]
¡û
>W141806142
JPLW01000009
Actinomycetota
Amycolatopsis sp. MJM2582 [JPLW]
99047
99121
+
Arg
TCT
[ENA]
¡û
>W1910182874
BJNG01000012
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
113379
113305
-
Arg
TCT
[ENA]
¡û
>W1910547560
FZNW01000011
Actinomycetota
Haloechinothrix alba DSM 45207 [FZNW]
155257
155331
+
Arg
TCT
[ENA]
¡û
>W1910657674
MASV01000011
Actinomycetota
Prauserella coralliicola DSM 45821 [MASV]
13523
13449
-
Arg
TCT
[ENA]
¡û
>W1910657718
MASW01000002
Actinomycetota
Prauserella muralis DSM 45305 [MASW]
699517
699443
-
Arg
TCT
[ENA]
¡û
>W1910812679
MVFD01000009
Actinomycetota
Amycolatopsis sp. BJA-103 [MVFD]
77046
77120
+
Arg
TCT
[ENA]
¡û
>W1911071551
NMQT01000089
Actinomycetota
Amycolatopsis thailandensis JCM 16380 [NMQT]
11326
11400
+
Arg
TCT
[ENA]
¡û
>W1911071616
NMQU01000146
Actinomycetota
Amycolatopsis alba DSM 44262 [NMQU]
52648
52722
+
Arg
TCT
[ENA]
¡û
>W1911676665
QHHU01000054
Actinomycetota
Amycolatopsis balhimycina DSM 5908 [QHHU]
76116
76040
-
Arg
TCT
[ENA]
¡û
>W1911676771
QHHW01000032
Actinomycetota
Amycolatopsis sp. WAC 01375 [QHHW]
235953
236027
+
Arg
TCT
[ENA]
¡û
>W1911676846
QHHX01000014
Actinomycetota
Amycolatopsis sp. WAC 01416 [QHHX]
67311
67237
-
Arg
TCT
[ENA]
¡û
>W1911678714
QHJI01000017
Actinomycetota
Amycolatopsis sp. WAC 04169 [QHJI]
84714
84788
+
Arg
TCT
[ENA]
¡û
>W1911678728
QHJJ01000002
Actinomycetota
Amycolatopsis sp. WAC 04182 [QHJJ]
1314238
1314312
+
Arg
TCT
[ENA]
¡û
>W1911678818
QHJK01000014
Actinomycetota
Amycolatopsis sp. WAC 04197 [QHJK]
198046
198120
+
Arg
TCT
[ENA]
¡û
>W1911678890
QHJM01000001
Actinomycetota
Streptomyces sp. WAC 05977 [QHJM]
428776
428850
+
Arg
TCT
[ENA]
¡û
>W1911679709
QHKL01000003
Actinomycetota
Amycolatopsis sp. WAC 01376 [QHKL]
70175
70101
-
Arg
TCT
[ENA]
¡û
>W1911814678
QZFV01000010
Actinomycetota
Amycolatopsis panacis YIM PH 21725 [QZFV]
37029
36955
-
Arg
TCT
[ENA]
¡û
>W1810058374
PDJK01000002
Actinomycetota
Amycolatopsis sulphurea DSM 46092 [PDJK]
4490883
4490809
-
Arg
TCT
[ENA]
¡û
>W1810121474
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
4711213
4711139
-
Arg
TCT
[ENA]
¡û
>W1810173266
PJMY01000002
Actinomycetota
Amycolatopsis niigatensis DSM 45165 [PJMY]
152681
152605
-
Arg
TCT
[ENA]
¡û
>W1810237643
PPHF01000165
Actinomycetota
Amycolatopsis sp. CA-126428 [PPHF]
82736
82660
-
Arg
TCT
[ENA]
¡û
>W1810254919
PQHZ01000014
Actinomycetota
Amycolatopsis palatopharyngis DSM 44832 [PQHZ]
124698
124772
+
Arg
TCT
[ENA]
¡û
>W1810356923
PVNH01000004
Actinomycetota
Prauserella shujinwangii CGMCC 4.7125 [PVNH]
497925
497851
-
Arg
TCT
[ENA]
¡û
>W1810579743
QEQT01000081
Actinomycetota
Prauserella sp. PE36 [QEQT]
49676
49750
+
Arg
TCT
[ENA]
¡û
>W1810608692
QGTN01000001
Actinomycetota
Prauserella marina DSM 45268 [QGTN]
1321890
1321964
+
Arg
TCT
[ENA]
¡û
>C151018995
CP007219
Actinomycetota
Amycolatopsis lurida [CP007219]
4456794
4456720
-
Arg
TCT
-
¡û
>C151040850
CP008953
Actinomycetota
Amycolatopsis japonica MG417-CF17 [CP008953]
6397855
6397929
+
Arg
TCT
[Ensembl]
¡û
>C151044233
CP009110
Actinomycetota
Amycolatopsis methanolica 239 [CP009110]
5492460
5492386
-
Arg
TCT
[Ensembl]
¡û
>C151087156
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
4986538
4986464
-
Arg
TCT
-
¡û
>C10100519
CP002000
Actinomycetota
Amycolatopsis mediterranei U32 [CP002000]
7540762
7540838
+
Arg
TCT
[Ensembl]
¡û
>W11181160
AGIT01000116
Actinomycetota
Saccharomonospora iraqiensis YIM 90007 [AGIT]
164
238
+
Arg
TCT
[ENA]
¡û
>C161040338
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
5790363
5790437
+
Arg
TCT
-
¡û
>W121036253
AHLX01000003
Actinomycetota
Saccharomonospora marina XMU15 [AHLX]
641005
640931
-
Arg
TCT
[ENA]
¡û
>C131003648
CP003410
Actinomycetota
Amycolatopsis keratiniphila HCCB10007 [CP003410]
2037602
2037528
-
Arg
TCT
[Ensembl]
¡û
>W1610781221
LOBU01000026
Actinomycetota
Amycolatopsis regifaucium [LOBU]
72950
72874
-
Arg
TCT
[ENA]
¡û
>W1610852557
LQCI01000017
Actinomycetota
Amycolatopsis regifaucium [LQCI]
46735
46811
+
Arg
TCT
[ENA]
¡û
>W1610855453
LQMT01000237
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
26469
26543
+
Arg
TCT
[ENA]
¡û
>W1610992469
LWSF01000037
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
24496
24572
+
Arg
TCT
[ENA]
¡û
>W1730030074
MKJV01000142
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
5568
5642
+
Arg
TCT
[ENA]
¡û
>W1710512134
FMZE01000001
Actinomycetota
Prauserella marina [FMZE]
51245
51169
-
Arg
TCT
[ENA]
¡û
>W1710514716
FNBE01000006
Actinomycetota
Pseudonocardia oroxyli [FNBE]
3938
4012
+
Arg
TCT
[ENA]
¡û
>W1710530149
FNON01000004
Actinomycetota
Amycolatopsis xylanica [FNON]
876553
876627
+
Arg
TCT
[ENA]
¡û
>W1710536153
FNTA01000004
Actinomycetota
Amycolatopsis lurida [FNTA]
1999995
2000069
+
Arg
TCT
[ENA]
¡û
>W1710549019
FOEF01000010
Actinomycetota
Amycolatopsis saalfeldensis [FOEF]
279555
279631
+
Arg
TCT
[ENA]
¡û
>W1710556512
FOKG01000007
Actinomycetota
Amycolatopsis marina [FOKG]
90454
90380
-
Arg
TCT
[ENA]
¡û
>W1710563414
FOPQ01000024
Actinomycetota
Amycolatopsis regifaucium [FOPQ]
22135
22059
-
Arg
TCT
[ENA]
¡û
>W1710565885
FORP01000002
Actinomycetota
Amycolatopsis sacchari [FORP]
160751
160677
-
Arg
TCT
[ENA]
¡û
>W1710571684
FOWC01000013
Actinomycetota
Amycolatopsis rubida [FOWC]
45333
45257
-
Arg
TCT
[ENA]
¡û
>W1710572713
FOWW01000004
Actinomycetota
Amycolatopsis arida deserti [FOWW]
3396
3322
-
Arg
TCT
[ENA]
¡û
>W1710580376
FPJG01000006
Actinomycetota
Amycolatopsis australiensis [FPJG]
3323813
3323737
-
Arg
TCT
[ENA]
¡û
>W1710628093
JPRA01000059
Actinomycetota
Amycolatopsis mediterranei [JPRA]
54328
54404
+
Arg
TCT
[ENA]
¡û
>W1710773687
LIWC01000003
Actinomycetota
Amycolatopsis sp. CB00013 [LIWC]
70955
70881
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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