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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176331 (29 seq.)
>W1711343463
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
3554009
3554083
+
Ile
GAT
[ENA]
¡û
>W1711343515
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
3557055
3557129
+
Ile
GAT
[ENA]
¡û
>W1711343591
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
1914717
1914643
-
Ile
GAT
[ENA]
¡û
>W1711343611
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
2137534
2137608
+
Ile
GAT
[ENA]
¡û
>W1711343685
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
5194526
5194600
+
Ile
GAT
[ENA]
¡û
>W1711343758
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
3940191
3940117
-
Ile
GAT
[ENA]
¡û
>W1711343778
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
1510903
1510977
+
Ile
GAT
[ENA]
¡û
>W1711343866
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
3951025
3950951
-
Ile
GAT
[ENA]
¡û
>W1711343910
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
6300962
6301036
+
Ile
GAT
[ENA]
¡û
>W1711343958
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
5859771
5859845
+
Ile
GAT
[ENA]
¡û
>W1711427761
MIFY01000001
Actinomycetota
Pseudonocardia autotrophica [MIFY]
49401
49475
+
Ile
GAT
[ENA]
¡û
>W1711427961
MIGB01000021
Actinomycetota
Pseudonocardia autotrophica [MIGB]
11774
11848
+
Ile
GAT
[ENA]
¡û
>W1711505789
MKVV01000068
Actinomycetota
Pseudonocardia sp. 73-21 [MKVV]
55626
55700
+
Ile
GAT
[ENA]
¡û
>C191005712
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
15475
15549
+
Ile
GAT
-
¡û
>W141757754
JNYD01000004
Actinomycetota
Pseudonocardia autotrophica [JNYD]
291994
292068
+
Ile
GAT
[ENA]
¡û
>W1910182939
BJNH01000039
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
11783
11857
+
Ile
GAT
[ENA]
¡û
>W1810121455
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
3338644
3338718
+
Ile
GAT
[ENA]
¡û
>SRA1002865
SRR002326.64951
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
50
124
+
Ile
GAT
[SRA]
>C151074998
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
5645856
5645782
-
Ile
GAT
-
¡û
>C151087138
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
3557998
3558072
+
Ile
GAT
-
¡û
>C151087192
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
5494849
5494925
+
Ile
GAT
-
¡û
>W10118403
ADUJ01000298
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
19433
19507
+
Ile
GAT
[ENA]
¡û
>W10128185
AEGE01001740
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
3507
3433
-
Ile
GAT
[ENA]
¡û
>W11123478
ADUJ01000298
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
19433
19507
+
Ile
GAT
[ENA]
¡û
>W11136870
AEGE01001740
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
3507
3433
-
Ile
GAT
[ENA]
¡û
>C161040357
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
1135763
1135689
-
Ile
GAT
-
¡û
>C161040405
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
2840683
2840609
-
Ile
GAT
[Ensembl]
¡û
>C161061306
CP013854
Actinomycetota
Pseudonocardia sp. HH130630-07 [CP013854]
2287306
2287232
-
Ile
GAT
[Ensembl]
¡û
>W1710570161
FOUY01000033
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
2234
2160
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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