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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176339 (17 seq.)
>C181047825
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
5428817
5428741
-
Asp
GTC
-
¡û
>C181047829
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
5428483
5428407
-
Asp
GTC
-
¡û
>C191138115
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
3184520
3184444
-
Asp
GTC
-
¡û
>C191138119
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
3184178
3184102
-
Asp
GTC
-
¡û
>C191138137
CP035280
Bacillota
Clostridium sp. JN-9 [CP035280]
2663442
2663366
-
Asp
GTC
-
¡û
>W141565584
JIBU02000034
Bacillota
Clostridium drakei [JIBU]
90163
90087
-
Asp
GTC
[ENA]
¡û
>W141569547
JIDX01000034
Bacillota
Clostridium scatologenes [JIDX]
20
96
+
Asp
GTC
[ENA]
¡û
>W09135129
ACVI01000193
Bacillota
Clostridium carboxidivorans P7 [ACVI]
1698
1774
+
Asp
GTC
[ENA]
¡û
>C151062260
CP009933
Bacillota
Clostridium scatologenes ATCC 25775 [CP009933]
4492697
4492773
+
Asp
GTC
[Ensembl]
¡û
>C151086658
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
4574259
4574183
-
Asp
GTC
[Ensembl]
¡û
>C151086662
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
4573924
4573848
-
Asp
GTC
[Ensembl]
¡û
>W11115423
ADEK01000026
Bacillota
Clostridium carboxidivorans P7 [ADEK]
45810
45886
+
Asp
GTC
[ENA]
¡û
>W1511707591
LGVO01000022
Bacillota
Clostridium botulinum 38028-CD [LGVO]
194
118
-
Asp
GTC
[ENA]
¡û
>W1511707603
LGVO01000034
Bacillota
Clostridium botulinum 38028-CD [LGVO]
179
255
+
Asp
GTC
[ENA]
¡û
>W1511707622
LGVO01000088
Bacillota
Clostridium botulinum 38028-CD [LGVO]
11759
11835
+
Asp
GTC
[ENA]
¡û
>W1710589412
FRAD01000008
Bacillota
Hathewaya proteolytica DSM 3090 [FRAD]
39093
39169
+
Asp
GTC
[ENA]
¡û
>W1710589416
FRAD01000008
Bacillota
Hathewaya proteolytica DSM 3090 [FRAD]
39449
39525
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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