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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176429 (33 seq.)
>W131169836
ARFA01000053
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
22951
23027
+
Asp
GTC
[ENA]
¡û
>W131169943
ARFD01000076
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
20493
20569
+
Asp
GTC
[ENA]
¡û
>W1711504019
MKUD01000076
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
241
165
-
Asp
GTC
[ENA]
¡û
>W1711769447
MVEC01000003
Bacteroidota
Spirosoma sp. 209 [MVEC]
363273
363349
+
Asp
GTC
[ENA]
¡û
>C171104389
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
4953109
4953185
+
Asp
GTC
-
¡û
>C171104451
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
2407172
2407096
-
Asp
GTC
-
¡û
>W131223463
AUCB01000046
Bacteroidota
Arenibacter certesii DSM 19833 [AUCB]
22621
22545
-
Asp
GTC
[ENA]
¡û
>WENV180014585
FQKF010057611
[FQKF] soil metagenome; Soil
221
294
+
Asp
GTC
[ENA]
¢þ
>W141079181
ATLH01000029
Bacteroidota
Cellulophaga baltica 13 [ATLH]
382923
382847
-
Asp
GTC
[ENA]
¡û
>W141079248
ATLJ01000034
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
322264
322188
-
Asp
GTC
[ENA]
¡û
>WENV181170550
OEIV010057181
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
921
847
-
Asp
GTC
[ENA]
¢þ
>C181067203
CP022515
Bacteroidota
Arenibacter algicola SMS7 [CP022515]
2256189
2256263
+
Asp
GTC
-
¡û
>C181113137
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
4230619
4230543
-
Asp
GTC
-
¡û
>W141807585
JPOO01000001
Bacteroidota
Arenibacter algicola [JPOO]
345655
345731
+
Asp
GTC
[ENA]
¡û
>W1910912868
NHPP01000014
Bacteroidota
Siphonobacter sp. SORGH_AS_0500 BAB-5404 [NHPP]
77120
77194
+
Asp
GTC
[ENA]
¡û
>W1910939724
NJAG01000024
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
15495
15421
-
Asp
GTC
[ENA]
¡û
>W1910939725
NJAG01000024
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
15378
15304
-
Asp
GTC
[ENA]
¡û
>W1911070285
NMPS01000216
Bacteroidota
Siphonobacter sp. BAB-5385 [NMPS]
14784
14710
-
Asp
GTC
[ENA]
¡û
>W1911497297
OCNH01000007
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
256405
256481
+
Asp
GTC
[ENA]
¡û
>W1810195641
PKRS01000003
Bacteroidota
Emticicia sp. TH156 [PKRS]
171025
170951
-
Asp
GTC
[ENA]
¡û
>W1810305994
PTRA01000001
Bacteroidota
Siphonobacter curvatus HR-U [PTRA]
2964063
2963989
-
Asp
GTC
[ENA]
¡û
>W1810305995
PTRA01000001
Bacteroidota
Siphonobacter curvatus HR-U [PTRA]
2963948
2963874
-
Asp
GTC
[ENA]
¡û
>W1810364364
PVTE01000004
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
88322
88246
-
Asp
GTC
[ENA]
¡û
>W1810692078
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
7815638
7815714
+
Asp
GTC
[ENA]
¡û
>W1810913022
QVMT01000001
Bacteroidota
Emticicia sp. C21 [QVMT]
397280
397206
-
Asp
GTC
[ENA]
¡û
>SRA1014971
SRR023845.403438
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
101
25
-
Asp
GTC
[SRA]
>C151068637
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
2093412
2093336
-
Asp
GTC
[Ensembl]
¡û
>C10111762
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
3737965
3738041
+
Asp
GTC
[Ensembl]
¡û
>C11110203
CP002691
Bacteroidota
Haliscomenobacter hydrossis DSM 1100 [CP002691]
4763340
4763264
-
Asp
GTC
[Ensembl]
¡û
>C11110204
CP002691
Bacteroidota
Haliscomenobacter hydrossis DSM 1100 [CP002691]
4763120
4763046
-
Asp
GTC
[Ensembl]
¡û
>C161027996
CP010535
Bacteroidota
Sediminicola sp. YIK13 [CP010535]
2287790
2287716
-
Asp
GTC
[Ensembl]
¡û
>W1710514675
FNBD01000001
Bacteroidota
Cellulophaga baltica [FNBD]
422319
422243
-
Asp
GTC
[ENA]
¡û
>W1710558187
FOLQ01000002
Bacteroidota
Spirosoma endophyticum [FOLQ]
38037
37961
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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