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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176432 (50 seq.)
>W131169818
ARFA01000021
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
19471
19394
-
Asn
GTT
[ENA]
¡û
>W131169928
ARFD01000014
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
68648
68725
+
Asn
GTT
[ENA]
¡û
>W1711385152
MEDT01000212
Bacteroidota
Cytophagaceae bacterium SCN 52-12 [MEDT]
2925
2849
-
Asn
GTT
[ENA]
¡û
>W1711502428
MKSR01000019
Bacteroidota
Dyadobacter sp. 50-39 [MKSR]
41271
41195
-
Asn
GTT
[ENA]
¡û
>W1711504011
MKUD01000052
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
254
178
-
Asn
GTT
[ENA]
¡û
>W1711606594
MORL01000023
Bacteroidota
Arsenicibacter rosenii [MORL]
9473
9397
-
Asn
GTT
[ENA]
¡û
>W1711769456
MVEC01000004
Bacteroidota
Spirosoma sp. 209 [MVEC]
65953
65877
-
Asn
GTT
[ENA]
¡û
>C171030722
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
205785
205861
+
Asn
GTT
-
¡û
>C171104416
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
992674
992598
-
Asn
GTT
-
¡û
>C171104422
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
111486
111562
+
Asn
GTT
-
¡û
>W131169900
ARFC01000010
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
138139
138213
+
Asn
GTT
[ENA]
¡û
>W131181682
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
1515646
1515570
-
Asn
GTT
[ENA]
¡û
>W131231132
AUIF01000009
Bacteroidota
Runella zeae DSM 19591 [AUIF]
89795
89869
+
Asn
GTT
[ENA]
¡û
>WENV181222741
OFDC01000155
[OFDC] hot springs metagenome; Water
2278
2204
-
Asn
GTT
[ENA]
¢þ
>WENV181841367
OGVR01014431
[OGVR] freshwater metagenome; freshwater
166
91
-
Asn
GTT
[ENA]
¢þ
>W141212165
AZQN01000006
Bacteroidota
Dyadobacter tibetensis Y620-1 [AZQN]
263492
263569
+
Asn
GTT
[ENA]
¡û
>W141242769
CAIT01000004
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
464075
464001
-
Asn
GTT
[ENA]
¡û
>WENV183726323
PJQF01160590
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
212
137
-
Asn
GTT
[ENA]
¢þ
>WENV170011163
APMI01046980
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
411
337
-
Asn
GTT
[ENA]
¢þ
>WENV170011164
APMI01046980
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
263
189
-
Asn
GTT
[ENA]
¢þ
>WENV170998877
MWWJ01142029
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
289
365
+
Asn
GTT
[ENA]
¢þ
>C181113125
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
6926376
6926450
+
Asn
GTT
-
¡û
>C181193439
CP030850
Bacteroidota
Runella rosea HYN0085 [CP030850]
3088822
3088748
-
Asn
GTT
-
¡û
>W09109932
ABUR01000021
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
122645
122721
+
Asn
GTT
[ENA]
¡û
>W1910597166
LAHI01000327
Cyanobacteriota
Nostoc linckia z16 [LAHI]
2214
2140
-
Asn
GTT
[ENA]
¡û
>W1910912857
NHPP01000007
Bacteroidota
Siphonobacter sp. SORGH_AS_0500 BAB-5404 [NHPP]
284833
284758
-
Asn
GTT
[ENA]
¡û
>W1910939717
NJAG01000015
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
63791
63716
-
Asn
GTT
[ENA]
¡û
>W1910993950
NKXO01000034
Bacteroidota
Raineya orbicola SPSPC-11 [NKXO]
11611
11685
+
Asn
GTT
[ENA]
¡û
>W1911070265
NMPS01000105
Bacteroidota
Siphonobacter sp. BAB-5385 [NMPS]
11744
11670
-
Asn
GTT
[ENA]
¡û
>W1911497280
OCNH01000002
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
1121777
1121702
-
Asn
GTT
[ENA]
¡û
>W1911726814
QTJY01000021
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
35341
35266
-
Asn
GTT
[ENA]
¡û
>W1911766827
QXED01000008
Bacteroidota
Fibrisoma montanum HYT19 [QXED]
184791
184866
+
Asn
GTT
[ENA]
¡û
>W1810195638
PKRS01000003
Bacteroidota
Emticicia sp. TH156 [PKRS]
305089
305163
+
Asn
GTT
[ENA]
¡û
>W1810306026
PTRA01000011
Bacteroidota
Siphonobacter curvatus HR-U [PTRA]
9115
9041
-
Asn
GTT
[ENA]
¡û
>W1810364394
PVTE01000053
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
3055
3129
+
Asn
GTT
[ENA]
¡û
>W1810595294
QGDT01000006
Bacteroidota
Dyadobacter jejuensis DSM 100346 [QGDT]
133157
133080
-
Asn
GTT
[ENA]
¡û
>W1810692065
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
4142987
4143062
+
Asn
GTT
[ENA]
¡û
>W1810694554
QLMC01000003
Bacteroidota
Larkinella arboricola DSM 21851 [QLMC]
234142
234216
+
Asn
GTT
[ENA]
¡û
>W1810745143
QOWE01000013
Bacteroidota
Larkinella punicea zzj9 [QOWE]
24730
24655
-
Asn
GTT
[ENA]
¡û
>W1810758681
QPIW01000003
Bacteroidota
Runella aurantiaca YX9 [QPIW]
241962
242039
+
Asn
GTT
[ENA]
¡û
>W1810913018
QVMT01000001
Bacteroidota
Emticicia sp. C21 [QVMT]
563766
563841
+
Asn
GTT
[ENA]
¡û
>C151068611
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
5079236
5079310
+
Asn
GTT
[Ensembl]
¡û
>SRA1048270
SRR035094.136992
454 Sequencing (SRP001815)
467
391
-
Asn
GTT
[SRA]
>C10111763
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
4912094
4912170
+
Asn
GTT
[Ensembl]
¡û
>C11112285
CP002305
Bacteroidota
Leadbetterella byssophila DSM 17132 [CP002305]
3221102
3221178
+
Asn
GTT
[Ensembl]
¡û
>C11118904
CP002859
Bacteroidota
Runella slithyformis DSM 19594 [CP002859]
910021
909944
-
Asn
GTT
[Ensembl]
¡û
>C121003575
CP002961
Bacteroidota
Emticicia oligotrophica DSM 17448 [CP002961]
4751841
4751917
+
Asn
GTT
[Ensembl]
¡û
>W1710521843
FNGS01000003
Bacteroidota
Siphonobacter aquaeclarae [FNGS]
160118
160044
-
Asn
GTT
[ENA]
¡û
>W1710558214
FOLQ01000028
Bacteroidota
Spirosoma endophyticum [FOLQ]
46753
46830
+
Asn
GTT
[ENA]
¡û
>W1710560892
FONS01000015
Bacteroidota
Pedobacter antarcticus [FONS]
716
642
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK