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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176473 (26 seq.)
>W1711124485
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
199768
199692
-
Met
CAT
[ENA]
¡û
>W1711124520
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
102498
102422
-
Met
CAT
[ENA]
¡û
>W1711124537
LUKF01000002
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
202225
202149
-
Met
CAT
[ENA]
¡û
>W1711384978
MEDP01000011
Bdellovibrionota
Bdellovibrio sp. SCN 50-8 [MEDP]
5060
5136
+
Met
CAT
[ENA]
¡û
>W1712010653
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
92076
92000
-
Met
CAT
[ENA]
¡û
>C001982
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
2606187
2606111
-
Met
CAT
[Ensembl]
¡û
>WENV181172560
OEIV010808870
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
41
117
+
Met
CAT
[ENA]
¢þ
>WENV181840041
OGVO01034343
[OGVO] freshwater metagenome; freshwater
328
404
+
Met
CAT
[ENA]
¢þ
>WENV181844816
OGVW01035651
[OGVW] freshwater metagenome; freshwater
394
318
-
Met
CAT
[ENA]
¢þ
>WENV170558371
CXWL01066013
[CXWL] groundwater metagenome; biofilm material
1661
1585
-
Met
CAT
[ENA]
¢þ
>WENV170709000
LNFM01000063
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
160232
160156
-
Met
CAT
[ENA]
¢þ
>WENV170712130
LNFM01010021
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
9923
9847
-
Met
CAT
[ENA]
¢þ
>WENV170988265
MWVX01429509
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
235
159
-
Met
CAT
[ENA]
¢þ
>C181047767
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
1195815
1195891
+
Met
CAT
-
¡û
>C191037148
CP025734
Bdellovibrionota
Bdellovibrio sp. qaytius [CP025734]
2235471
2235547
+
Met
CAT
-
¡û
>W1910698868
MEPU01000007
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29 [MEPU]
1032
956
-
Met
CAT
[ENA]
¡û
>W1910698898
MEPV01000015
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_02_FULL_40_15 [MEPV]
86647
86723
+
Met
CAT
[ENA]
¡û
>C151003371
CP002190
Bdellovibrionota
Bdellovibrio bacteriovorus W [CP002190]
2040787
2040711
-
Met
CAT
[Ensembl]
¡û
>C151031144
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
2005127
2005051
-
Met
CAT
[Ensembl]
¡û
>C151087496
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
2513802
2513726
-
Met
CAT
-
¡û
>W1511399667
JTEV01000016
Bdellovibrionota
Bdellovibrio sp. ArHS [JTEV]
128995
129071
+
Met
CAT
[ENA]
¡û
>C131001669
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
2752468
2752392
-
Met
CAT
[Ensembl]
¡û
>C131004037
CP003537
Bdellovibrionota
Pseudobdellovibrio exovorus JSS [CP003537]
1786440
1786516
+
Met
CAT
[Ensembl]
¡û
>W1610935425
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
199768
199692
-
Met
CAT
[ENA]
¡û
>W1610935460
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
102498
102422
-
Met
CAT
[ENA]
¡û
>W1610935477
LUKF01000002
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
202225
202149
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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