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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176560 (97 seq.)
>W1711094366
LTFW01000032
Actinomycetota
Corynebacterium sp. HMSC074A09 HMSC074A09 [LTFW]
15886
15810
-
Met
CAT
[ENA]
¡û
>W1711099150
LTKF01000095
Actinomycetota
Corynebacterium sp. HMSC072G08 [LTKF]
22410
22336
-
Met
CAT
[ENA]
¡û
>W1711106243
LTRQ01000082
Actinomycetota
Corynebacterium sp. HMSC035E02 [LTRQ]
11180
11104
-
Met
CAT
[ENA]
¡û
>W1711108710
LTTZ01000061
Actinomycetota
Corynebacterium sp. HMSC068G04 [LTTZ]
15150
15226
+
Met
CAT
[ENA]
¡û
>W1711109484
LTUR01000094
Actinomycetota
Corynebacterium sp. HMSC078C09 [LTUR]
9790
9864
+
Met
CAT
[ENA]
¡û
>W1711110976
LTWA01000078
Actinomycetota
Corynebacterium sp. HMSC074H12 [LTWA]
13561
13637
+
Met
CAT
[ENA]
¡û
>W1711186416
LWOF01000016
Actinomycetota
Corynebacterium sp. HMSC06C06 [LWOF]
657
731
+
Met
CAT
[ENA]
¡û
>W1711186624
LWOJ01000027
Actinomycetota
Corynebacterium sp. HMSC05D08 [LWOJ]
7655
7729
+
Met
CAT
[ENA]
¡û
>W131165375
ARBM01000006
Actinomycetota
Corynebacterium caspium DSM 44850 [ARBM]
40107
40031
-
Met
CAT
[ENA]
¡û
>C171117426
CP021252
Actinomycetota
Corynebacterium striatum KC-Na-01 [CP021252]
936184
936258
+
Met
CAT
-
¡û
>WENV180007739
FLSA01244731
[FLSA] metagenome; saliva
31
105
+
Ile2
CAT
[ENA]
¢þ
>WENV180697841
ODDE01006936
[ODDE] human metagenome; G_DNA_Supragingival plaque
683
609
-
Ile2
CAT
[ENA]
¢þ
>WENV180711540
ODFP01000139
[ODFP] human metagenome; G_DNA_Anterior nares
1079
1005
-
Ile2
CAT
[ENA]
¢þ
>WENV180711674
ODFQ01000820
[ODFQ] human metagenome; G_DNA_Anterior nares
416
490
+
Ile2
CAT
[ENA]
¢þ
>WENV180726042
ODGS01015988
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
109
35
-
Ile2
CAT
[ENA]
¢þ
>WENV180726601
ODGU01000166
[ODGU] human metagenome; G_DNA_Supragingival plaque
45152
45078
-
Ile2
CAT
[ENA]
¢þ
>WENV180735730
ODHB01000435
[ODHB] human metagenome; G_DNA_Supragingival plaque
10329
10255
-
Ile2
CAT
[ENA]
¢þ
>WENV180738441
ODHD01000032
[ODHD] human metagenome; G_DNA_Supragingival plaque
111502
111428
-
Ile2
CAT
[ENA]
¢þ
>WENV180754842
ODHU01001564
[ODHU] human metagenome; G_DNA_Supragingival plaque
647
573
-
Ile2
CAT
[ENA]
¢þ
>WENV180778307
ODIM01003096
[ODIM] human metagenome; G_DNA_Supragingival plaque
456
382
-
Ile2
CAT
[ENA]
¢þ
>WENV180796005
ODJB01000925
[ODJB] human metagenome; G_DNA_Supragingival plaque
14803
14729
-
Ile2
CAT
[ENA]
¢þ
>WENV180800563
ODJD01000175
[ODJD] human metagenome; G_DNA_Supragingival plaque
36428
36502
+
Ile2
CAT
[ENA]
¢þ
>WENV180822108
ODJT01000017
[ODJT] human metagenome; G_DNA_Supragingival plaque
31152
31226
+
Ile2
CAT
[ENA]
¢þ
>WENV180836515
ODKF01000266
[ODKF] human metagenome; G_DNA_Anterior nares
1465
1391
-
Ile2
CAT
[ENA]
¢þ
>WENV180838956
ODKH01002490
[ODKH] human metagenome; G_DNA_Anterior nares
535
461
-
Ile2
CAT
[ENA]
¢þ
>WENV180878854
ODLY01000343
[ODLY] human metagenome; G_DNA_Anterior nares
4311
4237
-
Ile2
CAT
[ENA]
¢þ
>WENV180881324
ODMA01000010
[ODMA] human metagenome; G_DNA_Supragingival plaque
335
409
+
Ile2
CAT
[ENA]
¢þ
>WENV180912929
ODSQ01001684
[ODSQ] human metagenome; G_DNA_Anterior nares
313
239
-
Ile2
CAT
[ENA]
¢þ
>WENV180913459
ODSU01003231
[ODSU] human metagenome; G_DNA_Anterior nares
957
883
-
Ile2
CAT
[ENA]
¢þ
>WENV180916254
ODTC01000575
[ODTC] human metagenome; G_DNA_Anterior nares
1192
1266
+
Ile2
CAT
[ENA]
¢þ
>WENV180917992
ODTF01000012
[ODTF] human metagenome; G_DNA_Anterior nares
47575
47501
-
Ile2
CAT
[ENA]
¢þ
>WENV180921210
ODTJ01000002
[ODTJ] human metagenome; G_DNA_Supragingival plaque
50808
50882
+
Ile2
CAT
[ENA]
¢þ
>WENV180925286
ODTK01076296
[ODTK] human metagenome; G_DNA_Supragingival plaque
116
42
-
Ile2
CAT
[ENA]
¢þ
>WENV180927711
ODTM01002797
[ODTM] human metagenome; G_DNA_Supragingival plaque
5023
5097
+
Ile2
CAT
[ENA]
¢þ
>WENV180937596
ODTX01000002
[ODTX] human metagenome; G_DNA_Supragingival plaque
142880
142954
+
Ile2
CAT
[ENA]
¢þ
>WENV180963886
ODUO01000018
[ODUO] human metagenome; G_DNA_Supragingival plaque
6769
6843
+
Ile2
CAT
[ENA]
¢þ
>WENV180966737
ODUR01001919
[ODUR] human metagenome; G_DNA_Anterior nares
689
615
-
Ile2
CAT
[ENA]
¢þ
>WENV180972974
ODUW01000669
[ODUW] human metagenome; G_DNA_Supragingival plaque
10373
10299
-
Ile2
CAT
[ENA]
¢þ
>WENV180975606
ODUY01012050
[ODUY] human metagenome; G_DNA_Supragingival plaque
1122
1048
-
Ile2
CAT
[ENA]
¢þ
>WENV180986950
ODVK01002389
[ODVK] human metagenome; G_DNA_Supragingival plaque
4744
4818
+
Ile2
CAT
[ENA]
¢þ
>WENV180997998
ODVT01000001
[ODVT] human metagenome; G_DNA_Buccal mucosa
166997
167071
+
Ile2
CAT
[ENA]
¢þ
>WENV181000320
ODVU01004839
[ODVU] human metagenome; G_DNA_Anterior nares
576
650
+
Ile2
CAT
[ENA]
¢þ
>WENV181010034
ODWG01000041
[ODWG] human metagenome; G_DNA_Anterior nares
12804
12730
-
Ile2
CAT
[ENA]
¢þ
>WENV181010039
ODWG01000064
[ODWG] human metagenome; G_DNA_Anterior nares
2705
2631
-
Ile2
CAT
[ENA]
¢þ
>WENV181012461
ODWK01000413
[ODWK] human metagenome; G_DNA_Supragingival plaque
16214
16140
-
Ile2
CAT
[ENA]
¢þ
>WENV181029288
ODXF01000056
[ODXF] human metagenome; G_DNA_Supragingival plaque
31420
31346
-
Ile2
CAT
[ENA]
¢þ
>WENV181030347
ODXG01000803
[ODXG] human metagenome; G_DNA_Anterior nares
391
317
-
Ile2
CAT
[ENA]
¢þ
>WENV181043047
ODXU01032510
[ODXU] human metagenome; G_DNA_Buccal mucosa
269
195
-
Ile2
CAT
[ENA]
¢þ
>WENV181066950
ODZI01003833
[ODZI] human metagenome; G_DNA_Supragingival plaque
3732
3806
+
Ile2
CAT
[ENA]
¢þ
>WENV181090099
OEBC01000001
[OEBC] human metagenome; G_DNA_Supragingival plaque
187602
187676
+
Ile2
CAT
[ENA]
¢þ
>WENV181106553
OEEI01000001
[OEEI] human metagenome; G_DNA_Supragingival plaque
284975
285049
+
Ile2
CAT
[ENA]
¢þ
>WENV181119571
OEFI01000418
[OEFI] human metagenome; G_DNA_Anterior nares
3081
3007
-
Ile2
CAT
[ENA]
¢þ
>WENV181120253
OEFJ01014174
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
371
297
-
Ile2
CAT
[ENA]
¢þ
>WENV181131438
OEGC01000106
[OEGC] human metagenome; G_DNA_Anterior nares
11912
11986
+
Ile2
CAT
[ENA]
¢þ
>WENV181135675
OEGG01086693
[OEGG] human metagenome; G_DNA_Tongue dorsum
200
274
+
Ile2
CAT
[ENA]
¢þ
>WENV181145682
OEHQ01000008
[OEHQ] human metagenome; G_DNA_Supragingival plaque
61826
61900
+
Ile2
CAT
[ENA]
¢þ
>WENV181156334
OEIE01009934
[OEIE] human metagenome; G_DNA_Supragingival plaque
182
108
-
Ile2
CAT
[ENA]
¢þ
>WENV181158721
OEIH01007298
[OEIH] human metagenome; G_DNA_Supragingival plaque
583
509
-
Ile2
CAT
[ENA]
¢þ
>WENV181178654
OEJT01000119
[OEJT] human metagenome; G_DNA_Supragingival plaque
60646
60720
+
Ile2
CAT
[ENA]
¢þ
>W141154869
AXLN01000005
Actinomycetota
Corynebacterium sp. KPL2004 [AXLN]
269101
269175
+
Met
CAT
[ENA]
¡û
>W141154987
AXLP01000003
Actinomycetota
Corynebacterium sp. KPL1996 [AXLP]
566217
566143
-
Met
CAT
[ENA]
¡û
>W141155205
AXLU01000002
Actinomycetota
Corynebacterium sp. KPL1859 [AXLU]
273244
273170
-
Met
CAT
[ENA]
¡û
>W141155355
AXLX01000006
Actinomycetota
Corynebacterium sp. KPL1855 [AXLX]
612
686
+
Met
CAT
[ENA]
¡û
>W141155529
AXMA01000008
Actinomycetota
Corynebacterium sp. KPL1818 [AXMA]
1150
1224
+
Met
CAT
[ENA]
¡û
>WENV182644410
OJLW01040182
[OJLW] metagenome; surface
5
79
+
Ile2
CAT
[ENA]
¢þ
>WENV182646595
OJMC01000015
[OJMC] metagenome; surface
46712
46638
-
Ile2
CAT
[ENA]
¢þ
>WENV182646607
OJMC01000028
[OJMC] metagenome; surface
36148
36222
+
Ile2
CAT
[ENA]
¢þ
>WENV182835363
OKFN01000002
[OKFN] human gut metagenome; human gut
53819
53745
-
Ile2
CAT
[ENA]
¢þ
>WENV182835833
OKFR01000653
[OKFR] human gut metagenome; human gut
798
724
-
Ile2
CAT
[ENA]
¢þ
>WENV183508069
OMHB01000081
[OMHB] human oral metagenome; human oral
3338
3412
+
Ile2
CAT
[ENA]
¢þ
>WENV183508957
OMHG01000573
[OMHG] human oral metagenome; human oral
2010
2084
+
Ile2
CAT
[ENA]
¢þ
>WENV183509685
OMHJ01004643
[OMHJ] human oral metagenome; human oral
438
512
+
Ile2
CAT
[ENA]
¢þ
>WENV183510586
OMHP01001152
[OMHP] human oral metagenome; human oral
1157
1231
+
Ile2
CAT
[ENA]
¢þ
>C181108762
CP024931
Actinomycetota
Corynebacterium striatum 215 [CP024931]
128109
128183
+
Met
CAT
-
¡û
>C181108763
CP024931
Actinomycetota
Corynebacterium striatum 215 [CP024931]
138214
138288
+
Met
CAT
-
¡û
>C181108859
CP024932
Actinomycetota
Corynebacterium striatum 216 [CP024932]
1278335
1278261
-
Met
CAT
-
¡û
>C181108860
CP024932
Actinomycetota
Corynebacterium striatum 216 [CP024932]
1236907
1236833
-
Met
CAT
-
¡û
>W141733437
JNKV01000005
Actinomycetota
Corynebacterium vitaeruminis Ga6A13 [JNKV]
144929
145005
+
Met
CAT
[ENA]
¡û
>W09119759
ACEB01000023
Actinomycetota
Corynebacterium matruchotii ATCC 33806 [ACEB]
78577
78653
+
Met
CAT
[ENA]
¡û
>W09122405
ACGD01000043
Actinomycetota
Corynebacterium accolens ATCC 49725 [ACGD]
234310
234384
+
Met
CAT
[ENA]
¡û
>W09134395
ACSH01000023
Actinomycetota
Corynebacterium matruchotii ATCC 14266 [ACSH]
641119
641043
-
Met
CAT
[ENA]
¡û
>W1911630666
PTJO01000003
Actinomycetota
Corynebacterium alimapuense CCUG 69366 [PTJO]
627648
627574
-
Met
CAT
[ENA]
¡û
>C151006000
CP004353
Actinomycetota
Corynebacterium vitaeruminis DSM 20294 [CP004353]
2101509
2101433
-
Met
CAT
[Ensembl]
¡û
>W1510562565
CTEG01000048
Actinomycetota
Corynebacterium striatum BM4687 [CTEG]
129201
129275
+
Met
CAT
[ENA]
¡û
>W1510562566
CTEG01000048
Actinomycetota
Corynebacterium striatum BM4687 [CTEG]
139325
139401
+
Met
CAT
[ENA]
¡û
>W1511438079
JULV01000143
Actinomycetota
Corynebacterium striatum 963_CAUR [JULV]
46280
46356
+
Met
CAT
[ENA]
¡û
>W1511438111
JULW01000063
Actinomycetota
Corynebacterium striatum 962_CAUR [JULW]
20916
20840
-
Met
CAT
[ENA]
¡û
>W1511443069
JUSN01000050
Actinomycetota
Corynebacterium striatum 797_CAUR [JUSN]
31030
30956
-
Met
CAT
[ENA]
¡û
>W1511443070
JUSN01000050
Actinomycetota
Corynebacterium striatum 797_CAUR [JUSN]
20907
20831
-
Met
CAT
[ENA]
¡û
>W1511449442
JVBA01000062
Actinomycetota
Corynebacterium striatum 587_CAUR [JVBA]
20886
20810
-
Met
CAT
[ENA]
¡û
>W1511451295
JVCW01000087
Actinomycetota
Corynebacterium striatum 542_CAUR [JVCW]
64606
64532
-
Met
CAT
[ENA]
¡û
>W1511451296
JVCW01000087
Actinomycetota
Corynebacterium striatum 542_CAUR [JVCW]
54496
54420
-
Met
CAT
[ENA]
¡û
>W1511467829
JVTL01000032
Actinomycetota
Corynebacterium striatum 1329_CAUR [JVTL]
23855
23929
+
Met
CAT
[ENA]
¡û
>W1511467952
JVTN01000093
Actinomycetota
Corynebacterium striatum 1327_CAUR [JVTN]
24382
24456
+
Met
CAT
[ENA]
¡û
>W1511585591
LAYR01000006
Actinomycetota
Corynebacterium striatum 1961 [LAYR]
117401
117475
+
Met
CAT
[ENA]
¡û
>W1610507498
FLTI01000050
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
29581
29507
-
Met
CAT
[ENA]
¡û
>W1710499716
FLTI01000050
Actinomycetota
Corynebacterium phoceense MC1 [FLTI]
29581
29507
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK