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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176635 (22 seq.)
>W131109420
APHV01000007
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
18337
18261
-
Arg
CCT
[ENA]
¡û
>WENV183727303
PJTO01025037
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
482
558
+
Arg
CCT
[ENA]
¢þ
>WENV170003433
AGTN01331913
[AGTN] bioreactor metagenome; poplar biomass
166
242
+
Arg
CCT
[ENA]
¢þ
>C181063140
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
1891529
1891605
+
Arg
CCT
-
¡û
>W141520239
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
468168
468244
+
Arg
CCT
[ENA]
¡û
>C191087921
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
1768036
1767960
-
Arg
CCT
-
¡û
>C191088028
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
2057551
2057627
+
Arg
CCT
-
¡û
>C191088087
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
1373282
1373206
-
Arg
CCT
-
¡û
>W1910613037
LGQV01000029
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
15446
15522
+
Arg
CCT
[ENA]
¡û
>W1910613267
LGQZ01000010
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
18630
18706
+
Arg
CCT
[ENA]
¡û
>W1910613407
LGRK01000043
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
148303
148379
+
Arg
CCT
[ENA]
¡û
>W1911138067
NOWT01000001
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
409719
409795
+
Arg
CCT
[ENA]
¡û
>W1911768791
QXHE01000071
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
25324
25400
+
Arg
CCT
[ENA]
¡û
>W1810222238
POQV01000004
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
88083
88007
-
Arg
CCT
[ENA]
¡û
>W1810223522
POTD01000003
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
88151
88075
-
Arg
CCT
[ENA]
¡û
>W1810226103
POWG01000021
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
87830
87906
+
Arg
CCT
[ENA]
¡û
>W1810692603
QLKQ01000088
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
16346
16422
+
Arg
CCT
[ENA]
¡û
>C151034740
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
165158
165234
+
Arg
CCT
[Ensembl]
¡û
>C121017734
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
94395
94319
-
Arg
CCT
[Ensembl]
¡û
>C161047353
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
351291
351367
+
Arg
CCT
[Ensembl]
¡û
>W1710626683
JPIR01000027
Alphaproteobacteria
Azospirillum brasilense [JPIR]
88326
88250
-
Arg
CCT
[ENA]
¡û
>W1710626755
JPIS01000024
Alphaproteobacteria
Azospirillum brasilense [JPIS]
138619
138543
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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