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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176637 (22 seq.)
>W131109438
APHV01000106
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
37685
37761
+
Arg
TCT
[ENA]
¡û
>WENV183727155
PJTO01007923
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
943
1019
+
Arg
TCT
[ENA]
¢þ
>C181063136
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
180532
180608
+
Arg
TCT
-
¡û
>W141520253
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
1666043
1666119
+
Arg
TCT
[ENA]
¡û
>C191087935
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
546812
546736
-
Arg
TCT
-
¡û
>C191088021
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
372419
372495
+
Arg
TCT
-
¡û
>C191088101
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
135323
135247
-
Arg
TCT
-
¡û
>W1910613081
LGQV01000143
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
7237
7161
-
Arg
TCT
[ENA]
¡û
>W1910613421
LGRK01000082
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
26207
26283
+
Arg
TCT
[ENA]
¡û
>W1911138082
NOWT01000003
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
93578
93502
-
Arg
TCT
[ENA]
¡û
>W1911768766
QXHE01000025
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
19575
19499
-
Arg
TCT
[ENA]
¡û
>W1911802605
QYUL01000001
Alphaproteobacteria
Azospirillum cavernae K2W22B-5 [QYUL]
566059
566135
+
Arg
TCT
[ENA]
¡û
>W1810222267
POQV01000010
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
140857
140933
+
Arg
TCT
[ENA]
¡û
>W1810223539
POTD01000006
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
268230
268306
+
Arg
TCT
[ENA]
¡û
>W1810226068
POWG01000001
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
369684
369760
+
Arg
TCT
[ENA]
¡û
>W1810692589
QLKQ01000038
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
20613
20537
-
Arg
TCT
[ENA]
¡û
>C151034754
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
1354448
1354524
+
Arg
TCT
[Ensembl]
¡û
>C121017706
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
1809249
1809325
+
Arg
TCT
[Ensembl]
¡û
>C161047365
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
1657052
1657128
+
Arg
TCT
[Ensembl]
¡û
>W1710609153
FXBR01000005
Alphaproteobacteria
Azospirillum lipoferum [FXBR]
1849956
1850032
+
Arg
TCT
[ENA]
¡û
>W1710626715
JPIR01000073
Alphaproteobacteria
Azospirillum brasilense [JPIR]
69498
69422
-
Arg
TCT
[ENA]
¡û
>W1710626790
JPIS01000102
Alphaproteobacteria
Azospirillum brasilense [JPIS]
15048
15124
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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