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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176657 (92 seq.)
>W131231042
AUID01000037
Bacillota
Proteocatella sphenisci DSM 23131 [AUID]
778
702
-
Asp
GTC
[ENA]
¡û
>W131231053
AUID01000042
Bacillota
Proteocatella sphenisci DSM 23131 [AUID]
3527
3451
-
Asp
GTC
[ENA]
¡û
>w017068
AAQV01000074
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
1717
1639
-
Asp
GTC
[ENA]
¡û
>w017058
AAQV01000071
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
1441
1368
-
Asp
GTC
[ENA]
¡û
>w017042
AAQV01000071
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
2913
2835
-
Asp
GTC
[ENA]
¡û
>w017032
AAQV01000054
Bacillota
Alkaliphilus oremlandii OhILAs [AAQV]
7099
7021
-
Asp
GTC
[ENA]
¡û
>WENV180094582
MTBK01016194
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
4640
4564
-
Asp
GTC
[ENA]
¢þ
>WENV180098085
MTBK01227307
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
22
98
+
Asp
GTC
[ENA]
¢þ
>WENV180208271
OBAI01113182
[OBAI] human gut metagenome; human gut
402
326
-
Asp
GTC
[ENA]
¢þ
>WENV180220737
OBAW01003689
[OBAW] human gut metagenome; human gut
143
219
+
Asp
GTC
[ENA]
¢þ
>WENV180223324
OBBG01002423
[OBBG] human gut metagenome; human gut
1467
1391
-
Asp
GTC
[ENA]
¢þ
>WENV180240690
OBDD01060192
[OBDD] human gut metagenome; human gut
146
222
+
Asp
GTC
[ENA]
¢þ
>WENV180540521
OCHQ01054547
[OCHQ] human gut metagenome; human gut
253
329
+
Asp
GTC
[ENA]
¢þ
>WENV180541289
OCHR01088756
[OCHR] human gut metagenome; human gut
225
149
-
Asp
GTC
[ENA]
¢þ
>WENV180542131
OCHS01060934
[OCHS] human gut metagenome; human gut
389
313
-
Asp
GTC
[ENA]
¢þ
>WENV180542374
OCHS01135727
[OCHS] human gut metagenome; human gut
80
4
-
Asp
GTC
[ENA]
¢þ
>WENV180542430
OCHS01161427
[OCHS] human gut metagenome; human gut
175
251
+
Asp
GTC
[ENA]
¢þ
>WENV180543061
OCHT01053243
[OCHT] human gut metagenome; human gut
311
235
-
Asp
GTC
[ENA]
¢þ
>WENV180544171
OCIP01008640
[OCIP] human gut metagenome; human gut
881
957
+
Asp
GTC
[ENA]
¢þ
>WENV180551973
OCJH01017719
[OCJH] human gut metagenome; human gut
1049
973
-
Asp
GTC
[ENA]
¢þ
>WENV180552506
OCJH01104584
[OCJH] human gut metagenome; human gut
99
175
+
Asp
GTC
[ENA]
¢þ
>WENV180568311
OCLM01084756
[OCLM] human gut metagenome; human gut
109
185
+
Asp
GTC
[ENA]
¢þ
>WENV180601562
OCPQ01076477
[OCPQ] human gut metagenome; faeces
252
176
-
Asp
GTC
[ENA]
¢þ
>WENV180623350
OCQE01017032
[OCQE] human gut metagenome; human gut
361
437
+
Asp
GTC
[ENA]
¢þ
>WENV180626584
OCQM01026168
[OCQM] human gut metagenome; human gut
382
306
-
Asp
GTC
[ENA]
¢þ
>WENV180628464
OCQO01144866
[OCQO] human gut metagenome; human gut
4
80
+
Asp
GTC
[ENA]
¢þ
>WENV180629000
OCQP01015787
[OCQP] human gut metagenome; human gut
1452
1376
-
Asp
GTC
[ENA]
¢þ
>WENV180630301
OCQT01027939
[OCQT] human gut metagenome; human gut
751
675
-
Asp
GTC
[ENA]
¢þ
>WENV180651219
OCSZ01088335
[OCSZ] human gut metagenome; human gut
154
78
-
Asp
GTC
[ENA]
¢þ
>WENV180659512
OCVV010865256
[OCVV] gut metagenome; gut
103
27
-
Asp
GTC
[ENA]
¢þ
>WENV180659514
OCVV010865256
[OCVV] gut metagenome; gut
103
27
-
Asp
GTC
[ENA]
¢þ
>WENV180665205
OCVV011182151
[OCVV] gut metagenome; gut
11
87
+
Asp
GTC
[ENA]
¢þ
>WENV180665209
OCVV011182151
[OCVV] gut metagenome; gut
11
87
+
Asp
GTC
[ENA]
¢þ
>WENV180715819
ODFW01052682
[ODFW] human metagenome; G_DNA_Stool
519
443
-
Asp
GTC
[ENA]
¢þ
>WENV180800012
ODJC01052421
[ODJC] human metagenome; G_DNA_Stool
111
187
+
Asp
GTC
[ENA]
¢þ
>WENV180916159
ODTB01133226
[ODTB] human metagenome; G_DNA_Stool
188
112
-
Asp
GTC
[ENA]
¢þ
>WENV180994230
ODVQ01046407
[ODVQ] human metagenome; G_DNA_Stool
433
357
-
Asp
GTC
[ENA]
¢þ
>WENV180997894
ODVS01174716
[ODVS] human metagenome; G_DNA_Stool
128
204
+
Asp
GTC
[ENA]
¢þ
>WENV181128400
OEFW01110058
[OEFW] human metagenome; G_DNA_Stool
124
200
+
Asp
GTC
[ENA]
¢þ
>WENV181345850
OFML01001208
[OFML] human gut metagenome; human gut
13997
14073
+
Asp
GTC
[ENA]
¢þ
>WENV181423802
OGCO01020132
[OGCO] human gut metagenome; human gut
609
533
-
Asp
GTC
[ENA]
¢þ
>WENV181510200
OGGQ01044550
[OGGQ] metagenome; Human gut stool
127
203
+
Asp
GTC
[ENA]
¢þ
>WENV181705893
OGPK01055043
[OGPK] human gut metagenome; faeces
629
553
-
Asp
GTC
[ENA]
¢þ
>WENV181751379
OGQP01055642
[OGQP] human gut metagenome; faeces
48
124
+
Asp
GTC
[ENA]
¢þ
>WENV181865038
OGWU01006639
[OGWU] human gut metagenome; faeces
3810
3886
+
Asp
GTC
[ENA]
¢þ
>WENV181883971
OGXI01024460
[OGXI] human gut metagenome; faeces
1535
1611
+
Asp
GTC
[ENA]
¢þ
>WENV181897148
OGXS01037752
[OGXS] human gut metagenome; faeces
58
134
+
Asp
GTC
[ENA]
¢þ
>WENV181904836
OGXX01038758
[OGXX] human gut metagenome; faeces
1147
1223
+
Asp
GTC
[ENA]
¢þ
>WENV182389132
OIEC01027322
[OIEC] human gut metagenome; human gut
44
120
+
Asp
GTC
[ENA]
¢þ
>C08000737
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2612265
2612192
-
Asp
GTC
[Ensembl]
¡û
>C08000753
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2610794
2610721
-
Asp
GTC
[Ensembl]
¡û
>C08000764
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
2604471
2604398
-
Asp
GTC
[Ensembl]
¡û
>C08000786
CP000853
Bacillota
Alkaliphilus oremlandii OhILAs [CP000853]
1923894
1923821
-
Asp
GTC
[Ensembl]
¡û
>WENV182519485
OIWP01016171
[OIWP] human gut metagenome; faeces
2047
2123
+
Asp
GTC
[ENA]
¢þ
>WENV182635730
OJKY01117519
[OJKY] metagenome; faeces
120
196
+
Asp
GTC
[ENA]
¢þ
>WENV182661341
OJMM01079610
[OJMM] human gut metagenome; feces
188
112
-
Asp
GTC
[ENA]
¢þ
>WENV182748307
OJQW01005536
[OJQW] human gut metagenome; stool sample
2320
2396
+
Asp
GTC
[ENA]
¢þ
>WENV182748327
OJQW01006198
[OJQW] human gut metagenome; stool sample
1322
1246
-
Asp
GTC
[ENA]
¢þ
>WENV182874100
OKRW01003519
[OKRW] human gut metagenome; faeces
1295
1219
-
Asp
GTC
[ENA]
¢þ
>WENV183032002
OLFX01035199
[OLFX] human gut metagenome; faeces
894
818
-
Asp
GTC
[ENA]
¢þ
>WENV183124122
OLNW01006417
[OLNW] human gut metagenome; faeces
6900
6976
+
Asp
GTC
[ENA]
¢þ
>WENV183168404
OLOZ01016437
[OLOZ] human gut metagenome; faeces
1458
1382
-
Asp
GTC
[ENA]
¢þ
>WENV183201578
OLPW01058025
[OLPW] human gut metagenome; faeces
813
889
+
Asp
GTC
[ENA]
¢þ
>WENV183202764
OLPX01040928
[OLPX] human gut metagenome; faeces
291
367
+
Asp
GTC
[ENA]
¢þ
>WENV183215846
OLQG01024341
[OLQG] human gut metagenome; faeces
67
143
+
Asp
GTC
[ENA]
¢þ
>WENV183266640
OLRT01006308
[OLRT] human gut metagenome; faeces
1117
1041
-
Asp
GTC
[ENA]
¢þ
>WENV183298011
OLSM01025148
[OLSM] human gut metagenome; faeces
603
527
-
Asp
GTC
[ENA]
¢þ
>WENV183345826
OLWR01032176
[OLWR] human gut metagenome; feces
67
143
+
Asp
GTC
[ENA]
¢þ
>WENV183350650
OLWX01003827
[OLWX] human gut metagenome; feces
3071
2995
-
Asp
GTC
[ENA]
¢þ
>WENV183372364
OLXW01008705
[OLXW] human gut metagenome; feces
940
864
-
Asp
GTC
[ENA]
¢þ
>WENV183569634
OOCB01102961
[OOCB] human gut metagenome; human gut
279
355
+
Asp
GTC
[ENA]
¢þ
>WENV183650654
OQVT01033458
[OQVT] human gut metagenome; human gut
389
313
-
Asp
GTC
[ENA]
¢þ
>WENV183759721
PPYE01210706
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
829
905
+
Asp
GTC
[ENA]
¢þ
>WENV170689795
LFRM01311910
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
74
150
+
Asp
GTC
[ENA]
¢þ
>W141619914
JJMM01000018
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
1007
1083
+
Asp
GTC
[ENA]
¡û
>W141619922
JJMM01000018
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
1927
2003
+
Asp
GTC
[ENA]
¡û
>W141619931
JJMM01000021
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
6512
6436
-
Asp
GTC
[ENA]
¡û
>W141619953
JJMM01000023
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
109397
109321
-
Asp
GTC
[ENA]
¡û
>C151024050
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
53841
53917
+
Asp
GTC
[Ensembl]
¡û
>C151024074
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
193599
193675
+
Asp
GTC
[Ensembl]
¡û
>C151024097
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
1861390
1861314
-
Asp
GTC
[Ensembl]
¡û
>C11106350
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
568063
568139
+
Asp
GTC
[Ensembl]
¡û
>C11106370
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
574892
574968
+
Asp
GTC
[Ensembl]
¡û
>C11106388
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
2510093
2510017
-
Asp
GTC
[Ensembl]
¡û
>W1511577796
LARA01000033
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
612
688
+
Asp
GTC
[ENA]
¡û
>W1511577821
LARA01000037
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
585
661
+
Asp
GTC
[ENA]
¡û
>W1511577849
LARA01000044
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
658
582
-
Asp
GTC
[ENA]
¡û
>W1511577968
LARA01000085
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
683
759
+
Asp
GTC
[ENA]
¡û
>W1511578085
LARA01000114
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
524
600
+
Asp
GTC
[ENA]
¡û
>W1511578159
LARA01000146
Bacillota
Clostridium sp. A254.MGS-251 [LARA]
386
310
-
Asp
GTC
[ENA]
¡û
>W1710602781
FUYN01000010
Bacillota
Acetoanaerobium noterae [FUYN]
41217
41141
-
Asp
GTC
[ENA]
¡û
>W1710602796
FUYN01000011
Bacillota
Acetoanaerobium noterae [FUYN]
90
166
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK