This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176658 (11 seq.)
>WENV180715780
ODFW01045581
[ODFW] human metagenome; G_DNA_Stool
437
513
+
Arg
TCT
[ENA]
¢þ
>WENV180963558
ODUN01250641
[ODUN] human metagenome; G_DNA_Stool
238
161
-
Arg
TCT
[ENA]
¢þ
>WENV181704090
OGPJ01081018
[OGPJ] human gut metagenome; faeces
204
128
-
Arg
TCT
[ENA]
¢þ
>WENV183371721
OLXV01089218
[OLXV] human gut metagenome; feces
450
526
+
Arg
TCT
[ENA]
¢þ
>W141619935
JJMM01000021
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
6166
6090
-
Arg
TCT
[ENA]
¡û
>W141619957
JJMM01000023
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
109053
108977
-
Arg
TCT
[ENA]
¡û
>W141619972
JJMM01000024
Bacillota
Peptoclostridium litorale DSM 5388 [JJMM]
517
441
-
Arg
TCT
[ENA]
¡û
>C151024054
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
54183
54259
+
Arg
TCT
[Ensembl]
¡û
>C151024078
CP007452
Bacillota
Peptoclostridium acidaminophilum DSM 3953 [CP007452]
194001
194077
+
Arg
TCT
[Ensembl]
¡û
>W1710594534
FSRH01000025
Bacillota
Peptoclostridium litorale DSM 5388 [FSRH]
8165
8089
-
Arg
TCT
[ENA]
¡û
>W1710594550
FSRH01000033
Bacillota
Peptoclostridium litorale DSM 5388 [FSRH]
1429
1353
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK