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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17666 (85 seq.)
>W1710943655
LOPX01000017
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
101888
101798
-
Ser
TGA
[ENA]
¡û
>W131037603
AMFF01000194
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMFF]
263
173
-
Ser
TGA
[ENA]
¡û
>W131037604
AMFF01000209
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMFF]
11140
11230
+
Ser
TGA
[ENA]
¡û
>W131038453
AMGC01000237
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
2222
2312
+
Ser
TGA
[ENA]
¡û
>W131038463
AMGC01000254
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
3246
3156
-
Ser
TGA
[ENA]
¡û
>W1711029611
LRFH01000017
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
101888
101798
-
Ser
TGA
[ENA]
¡û
>W131195172
ASSK01000065
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [ASSK]
10942
11032
+
Ser
TGA
[ENA]
¡û
>W131195181
ASSK01000113
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [ASSK]
7552
7642
+
Ser
TGA
[ENA]
¡û
>W1711372572
MDTQ01000001
Gammaproteobacteria
Terasakiispira papahanaumokuakeensis [MDTQ]
1763040
1762950
-
Ser
TGA
[ENA]
¡û
>W1711372802
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
2412205
2412295
+
Ser
TGA
[ENA]
¡û
>W1711372803
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
2529706
2529796
+
Ser
TGA
[ENA]
¡û
>C171026488
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
1653516
1653606
+
Ser
TGA
-
¡û
>C171026519
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
294567
294477
-
Ser
TGA
-
¡û
>C171026544
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
1784142
1784232
+
Ser
TGA
-
¡û
>C171026575
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
425094
425004
-
Ser
TGA
-
¡û
>C171026593
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
2638438
2638528
+
Ser
TGA
-
¡û
>C171026628
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
1283466
1283376
-
Ser
TGA
-
¡û
>C171026649
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
2635638
2635728
+
Ser
TGA
-
¡û
>C171026683
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
1280544
1280454
-
Ser
TGA
-
¡û
>C171026705
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
2539608
2539698
+
Ser
TGA
-
¡û
>C171026742
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
1119595
1119505
-
Ser
TGA
-
¡û
>C171026762
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
2557051
2557141
+
Ser
TGA
-
¡û
>C171026800
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
1098576
1098486
-
Ser
TGA
-
¡û
>C171026818
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
2557670
2557760
+
Ser
TGA
-
¡û
>C171026856
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
1098831
1098741
-
Ser
TGA
-
¡û
>C171026857
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
24665
24755
+
Ser
TGA
-
¡û
>C171026909
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
1759728
1759638
-
Ser
TGA
-
¡û
>C171026943
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
1622281
1622371
+
Ser
TGA
-
¡û
>C171026968
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
169606
169516
-
Ser
TGA
-
¡û
>C171026977
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
578656
578746
+
Ser
TGA
-
¡û
>C171027018
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
2312382
2312292
-
Ser
TGA
-
¡û
>C171027042
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
2557146
2557236
+
Ser
TGA
-
¡û
>C171027080
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
1098635
1098545
-
Ser
TGA
-
¡û
>C171027081
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
24664
24754
+
Ser
TGA
-
¡û
>C171027133
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
1759731
1759641
-
Ser
TGA
-
¡û
>C171027137
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
24664
24754
+
Ser
TGA
-
¡û
>C171027189
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
1759730
1759640
-
Ser
TGA
-
¡û
>C171027201
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
578861
578951
+
Ser
TGA
-
¡û
>C171027242
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
2313398
2313308
-
Ser
TGA
-
¡û
>WENV181404127
OGBZ01001471
[OGBZ] sediment metagenome; hot spring sediment
305
395
+
Ser
TGA
[ENA]
¢þ
>WENV181412519
OGCK01001186
[OGCK] hot springs metagenome; hot spring sediment
2933
2843
-
Ser
TGA
[ENA]
¢þ
>W141221186
AZYQ02000025
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
3731
3641
-
Ser
TGA
[ENA]
¡û
>W141221229
AZYQ02000209
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
11897
11807
-
Ser
TGA
[ENA]
¡û
>ENV08000031
ABLU01053340
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
116
26
-
Ser
TGA
[ENA]
¡û
>ENV08000033
ABLU01055589
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
98
7
-
Ser
TGA
[ENA]
¡û
>ENV08000036
ABLU01060905
microbial fraction from oxidized sediments of the Soudan Mine (Minnesota)
97
7
-
Ser
TGA
[ENA]
¡û
>C191005949
AP018933
Gammaproteobacteria
Zymobacter palmae IAM14233 [AP018933]
1774624
1774534
-
Ser
TGA
-
¡û
>C191116620
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
569800
569890
+
Ser
TGA
-
¡û
>C191116659
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
2321392
2321302
-
Ser
TGA
-
¡û
>W141557580
JHVG01000032
Gammaproteobacteria
Zymobacter palmae DSM 10491 [JHVG]
37802
37892
+
Ser
TGA
[ENA]
¡û
>W1910339596
FTLE01000003
Gammaproteobacteria
Halomonas massiliensis Marseille-P2426 [FTLE]
218461
218551
+
Ser
TGA
[ENA]
¡û
>W1911652721
QBEV01000017
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
4760
4849
+
Ser
TGA
[ENA]
¡û
>W1911652754
QBEV01000341
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
1936
1846
-
Ser
TGA
[ENA]
¡û
>W1911817774
QZMT01000005
Gammaproteobacteria
Guyparkeria sp. SCN-R1 [QZMT]
103431
103341
-
Ser
TGA
[ENA]
¡û
>W1810054405
PDFD01000225
Gammaproteobacteria
Piscirickettsia salmonis S-GIM [PDFD]
11160
11250
+
Ser
TGA
[ENA]
¡û
>W1810054407
PDFD01000250
Gammaproteobacteria
Piscirickettsia salmonis S-GIM [PDFD]
283
193
-
Ser
TGA
[ENA]
¡û
>W1810121109
PHUC01000002
Gammaproteobacteria
Halomonas sp. es.049 es.049 ES.049 [PHUC]
1358546
1358456
-
Ser
TGA
[ENA]
¡û
>W1810363672
PVRV01000023
Gammaproteobacteria
Phytohalomonas tamaricis R4HLG17 [PVRV]
86490
86400
-
Ser
TGA
[ENA]
¡û
>C151086978
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
1017443
1017533
+
Ser
TGA
[Ensembl]
¡û
>C151086997
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
2749754
2749664
-
Ser
TGA
[Ensembl]
¡û
>C151095287
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
578655
578745
+
Ser
TGA
-
¡û
>C151095328
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
2312378
2312288
-
Ser
TGA
-
¡û
>W1510071609
CDGR01000149
Gammaproteobacteria
Halomonas salina B6 [CDGR]
44377
44467
+
Ser
TGA
[ENA]
¡û
>W1511336336
JRAD02000073
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
3729
3639
-
Ser
TGA
[ENA]
¡û
>W1511336337
JRAD02000080
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
11902
11812
-
Ser
TGA
[ENA]
¡û
>W1511337064
JRAV02000066
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
3178
3088
-
Ser
TGA
[ENA]
¡û
>W1511337068
JRAV02000083
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
9158
9068
-
Ser
TGA
[ENA]
¡û
>W1511346440
JRHD01000200
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
7505
7415
-
Ser
TGA
[ENA]
¡û
>W1511346441
JRHD01000200
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
7410
7320
-
Ser
TGA
[ENA]
¡û
>W1511346442
JRHD01000223
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
223
133
-
Ser
TGA
[ENA]
¡û
>W1511346900
JRHP01000255
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
1180
1090
-
Ser
TGA
[ENA]
¡û
>W1511346901
JRHP01000285
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
1180
1090
-
Ser
TGA
[ENA]
¡û
>W1511657134
LELB01000020
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
4229
4139
-
Ser
TGA
[ENA]
¡û
>W1511657175
LELB01000184
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
2041
1951
-
Ser
TGA
[ENA]
¡û
>W1511657188
LELB01000235
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
10750
10840
+
Ser
TGA
[ENA]
¡û
>C161042021
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
522301
522391
+
Ser
TGA
[Ensembl]
¡û
>C161042056
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
2225713
2225623
-
Ser
TGA
[Ensembl]
¡û
>C161062462
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
578824
578914
+
Ser
TGA
-
¡û
>C161062503
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
2285070
2284980
-
Ser
TGA
-
¡û
>C161063129
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
578640
578730
+
Ser
TGA
-
¡û
>C161063170
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
2330077
2329987
-
Ser
TGA
-
¡û
>W1610799955
LOPX01000017
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
101888
101798
-
Ser
TGA
[ENA]
¡û
>W1610877879
LRFH01000017
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
101888
101798
-
Ser
TGA
[ENA]
¡û
>W1710541368
FNYH01000001
Gammaproteobacteria
Allopseudospirillum japonicum [FNYH]
292610
292520
-
Ser
TGA
[ENA]
¡û
>W1710578447
FPBP01000001
Gammaproteobacteria
Halomonas korlensis [FPBP]
42889
42799
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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