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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176778 (116 seq.)
>C171083828
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
2467795
2467719
-
Ile
GAT
-
¡û
>C171083830
CP018787
Betaproteobacteria
Oxalobacter formigenes HC-1 [CP018787]
2373379
2373303
-
Ile
GAT
-
¡û
>C171085361
CP018845
Betaproteobacteria
Herbaspirillum robiniae AA6 [CP018845]
3704883
3704959
+
Ile
GAT
-
¡û
>C171085365
CP018845
Betaproteobacteria
Herbaspirillum robiniae AA6 [CP018845]
4301393
4301469
+
Ile
GAT
-
¡û
>C171085368
CP018845
Betaproteobacteria
Herbaspirillum robiniae AA6 [CP018845]
4643336
4643412
+
Ile
GAT
-
¡û
>C171094240
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
2369801
2369725
-
Ile
GAT
-
¡û
>C171094242
CP019430
Betaproteobacteria
Oxalobacter formigenes OXCC13 [CP019430]
2275383
2275307
-
Ile
GAT
-
¡û
>C171116300
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
2765367
2765291
-
Ile
GAT
-
¡û
>C171116302
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
2707841
2707765
-
Ile
GAT
-
¡û
>C171116313
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
2000712
2000636
-
Ile
GAT
-
¡û
>C171130517
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
2160368
2160292
-
Ile
GAT
-
¡û
>C171130520
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
1854839
1854763
-
Ile
GAT
-
¡û
>C010350
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
204476
204552
+
Ile
GAT
[Ensembl]
¡û
>C010353
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
576711
576787
+
Ile
GAT
[Ensembl]
¡û
>C011104
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
261339
261415
+
Ile
GAT
[Ensembl]
¡û
>C011107
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
632139
632215
+
Ile
GAT
[Ensembl]
¡û
>WENV180026740
FTIU01067306
[FTIU] metagenome; soil
1687
1611
-
Ile
GAT
[ENA]
¢þ
>WENV180030158
FTJL01237371
[FTJL] metagenome; soil
1228
1152
-
Ile
GAT
[ENA]
¢þ
>WENV180032704
FTKD01000020
[FTKD] metagenome; soil
111951
111875
-
Ile
GAT
[ENA]
¢þ
>WENV180032843
FTKD01001697
[FTKD] metagenome; soil
2563
2487
-
Ile
GAT
[ENA]
¢þ
>WENV180033121
FTKD01411761
[FTKD] metagenome; soil
23896
23972
+
Ile
GAT
[ENA]
¢þ
>WENV180035801
FTLB01012350
[FTLB] metagenome; soil
4034
3958
-
Ile
GAT
[ENA]
¢þ
>WENV180035902
FTLB01046262
[FTLB] metagenome; soil
682
606
-
Ile
GAT
[ENA]
¢þ
>WENV180115545
OAPT01006555
[OAPT] marine metagenome; seawater
802
726
-
Ile
GAT
[ENA]
¢þ
>WENV180247211
OBEQ010006617
[OBEQ] groundwater metagenome; groundwater
497
573
+
Ile
GAT
[ENA]
¢þ
>WENV180309066
OBJR01492781
[OBJR] soil metagenome; soil
1
77
+
Ile
GAT
[ENA]
¢þ
>WENV180341178
OBLI01088354
[OBLI] pig gut metagenome; faeces
4
80
+
Ile
GAT
[ENA]
¢þ
>WENV180384075
OBOW01004478
[OBOW] marine metagenome; seawater
215
291
+
Ile
GAT
[ENA]
¢þ
>WENV180819105
ODJQ01259505
[ODJQ] human metagenome; G_DNA_Stool
119
195
+
Ile
GAT
[ENA]
¢þ
>WENV180851095
ODKV01025300
[ODKV] human metagenome; G_DNA_Stool
1513
1437
-
Ile
GAT
[ENA]
¢þ
>WENV180886967
ODME01339351
[ODME] human metagenome; G_DNA_Stool
90
166
+
Ile
GAT
[ENA]
¢þ
>WENV180996241
ODVR01174430
[ODVR] human metagenome; G_DNA_Stool
71
147
+
Ile
GAT
[ENA]
¢þ
>WENV181111265
OEEK01046646
[OEEK] human metagenome; G_DNA_Stool
674
598
-
Ile
GAT
[ENA]
¢þ
>WENV181149492
OEHT01094354
[OEHT] human metagenome; G_DNA_Stool
142
218
+
Ile
GAT
[ENA]
¢þ
>WENV181286424
OFGV01038877
[OFGV] soil metagenome; Clay
430
354
-
Ile
GAT
[ENA]
¢þ
>WENV181293336
OFHG01001558
[OFHG] soil metagenome; Clay
2586
2662
+
Ile
GAT
[ENA]
¢þ
>WENV181296830
OFHK01000549
[OFHK] soil metagenome; Clay
4211
4135
-
Ile
GAT
[ENA]
¢þ
>WENV181323497
OFKY01002038
[OFKY] marine metagenome; sea ice
186
262
+
Ile
GAT
[ENA]
¢þ
>WENV181447775
OGDU01042022
[OGDU] metagenome; Human gut stool
697
621
-
Ile
GAT
[ENA]
¢þ
>WENV181839545
OGVO01003056
[OGVO] freshwater metagenome; freshwater
572
648
+
Ile
GAT
[ENA]
¢þ
>WENV181884106
OGXI01040431
[OGXI] human gut metagenome; faeces
880
804
-
Ile
GAT
[ENA]
¢þ
>WENV181902588
OGXW01045884
[OGXW] human gut metagenome; faeces
946
870
-
Ile
GAT
[ENA]
¢þ
>WENV181913638
OGYE01015983
[OGYE] human gut metagenome; faeces
154
230
+
Ile
GAT
[ENA]
¢þ
>WENV181916225
OGYF01067665
[OGYF] human gut metagenome; faeces
697
621
-
Ile
GAT
[ENA]
¢þ
>WENV181926308
OGYM01080240
[OGYM] human gut metagenome; faeces
39
115
+
Ile
GAT
[ENA]
¢þ
>WENV181929723
OGYO01057696
[OGYO] human gut metagenome; faeces
755
679
-
Ile
GAT
[ENA]
¢þ
>WENV181992420
OHAQ01055928
[OHAQ] human gut metagenome; faeces
124
200
+
Ile
GAT
[ENA]
¢þ
>WENV181998298
OHAU01048927
[OHAU] human gut metagenome; faeces
155
231
+
Ile
GAT
[ENA]
¢þ
>WENV182009871
OHBJ01064698
[OHBJ] human gut metagenome; faeces
663
587
-
Ile
GAT
[ENA]
¢þ
>WENV182609415
OJJV01007597
[OJJV] metagenome; faeces
2390
2314
-
Ile
GAT
[ENA]
¢þ
>WENV182885937
OKSC01048808
[OKSC] human gut metagenome; faeces
148
224
+
Ile
GAT
[ENA]
¢þ
>WENV183034178
OLFY01064123
[OLFY] human gut metagenome; faeces
688
612
-
Ile
GAT
[ENA]
¢þ
>WENV183037720
OLGA01061747
[OLGA] human gut metagenome; faeces
150
226
+
Ile
GAT
[ENA]
¢þ
>WENV183085610
OLJF01006933
[OLJF] metagenome; faeces
243
319
+
Ile
GAT
[ENA]
¢þ
>WENV183131600
OLOA01077961
[OLOA] human gut metagenome; faeces
598
522
-
Ile
GAT
[ENA]
¢þ
>WENV183316350
OLVS01025714
[OLVS] human gut metagenome; feces
8
84
+
Ile
GAT
[ENA]
¢þ
>WENV183575914
OOCI01012464
[OOCI] human gut metagenome; human gut
2344
2268
-
Ile
GAT
[ENA]
¢þ
>WENV183614519
OODW01000007
[OODW] marine metagenome; sea ice
4026
3950
-
Ile
GAT
[ENA]
¢þ
>WENV183617987
OOFL01000960
[OOFL] marine metagenome; seawater
1147
1071
-
Ile
GAT
[ENA]
¢þ
>WENV183697680
OUNK010017618
[OUNK] metagenome; soil
1388
1312
-
Ile
GAT
[ENA]
¢þ
>WENV183733472
PJTY01002594
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
2460
2384
-
Ile
GAT
[ENA]
¢þ
>WENV183734682
PJTZ01039493
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
203
279
+
Ile
GAT
[ENA]
¢þ
>WENV183739234
PJUE01004204
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
2075
1999
-
Ile
GAT
[ENA]
¢þ
>WENV183744332
PJUK01008578
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
338
262
-
Ile
GAT
[ENA]
¢þ
>WENV170071304
CDZQ01052295
[CDZQ] gut metagenome; human stools
1428
1352
-
Ile
GAT
[ENA]
¢þ
>WENV170142048
CENX01340552
[CENX] marine metagenome genome assembly TARA_018_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
627
551
-
Ile
GAT
[ENA]
¢þ
>WENV170661566
JXWV01058282
[JXWV] soil metagenome; rice field; organic FYM Plot
444
368
-
Ile
GAT
[ENA]
¢þ
>WENV170684500
LFRM01043215
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
278
354
+
Ile
GAT
[ENA]
¢þ
>WENV170714463
LNFM01075057
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1590
1514
-
Ile
GAT
[ENA]
¢þ
>WENV170961916
MLJW01006657
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
310
386
+
Ile
GAT
[ENA]
¢þ
>W09119226
ACDP01000054
Betaproteobacteria
Oxalobacter paraformigenes HOxBLS [ACDP]
2009
2085
+
Ile
GAT
[ENA]
¡û
>W09119273
ACDQ01000020
Betaproteobacteria
Oxalobacter formigenes OXCC13 [ACDQ]
3871
3795
-
Ile
GAT
[ENA]
¡û
>W1910126430
BGOW01000023
Betaproteobacteria
Sulfuriferula multivorans TTN [BGOW]
3826
3750
-
Ile
GAT
[ENA]
¡û
>W1910128307
BHGL01000031
Betaproteobacteria
Sulfuriferula thiophila mst6 [BHGL]
245
169
-
Ile
GAT
[ENA]
¡û
>W1911572367
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
3251140
3251216
+
Ile
GAT
[ENA]
¡û
>W1911572392
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1799937
1799861
-
Ile
GAT
[ENA]
¡û
>W1911572394
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
1519626
1519550
-
Ile
GAT
[ENA]
¡û
>W1911647624
QAJP01000012
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
2176
2252
+
Ile
GAT
[ENA]
¡û
>W1911802794
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
3111453
3111377
-
Ile
GAT
[ENA]
¡û
>W1911802796
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
3069675
3069599
-
Ile
GAT
[ENA]
¡û
>W1911802817
QYUO01000002
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
524024
524100
+
Ile
GAT
[ENA]
¡û
>W1911802819
QYUO01000002
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
1573852
1573776
-
Ile
GAT
[ENA]
¡û
>W1810297237
PTLZ01000008
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
2160
2236
+
Ile
GAT
[ENA]
¡û
>W1810326789
PUGF01000047
Betaproteobacteria
Solimicrobium silvestre S20-91 [PUGF]
3869
3793
-
Ile
GAT
[ENA]
¡û
>W1810399996
PYFP01000001
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
2849086
2849010
-
Ile
GAT
[ENA]
¡û
>W1810400021
PYFP01000002
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
1658033
1658109
+
Ile
GAT
[ENA]
¡û
>W1810400033
PYFP01000002
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
5023
4947
-
Ile
GAT
[ENA]
¡û
>W1810400036
PYFP01000003
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
517399
517323
-
Ile
GAT
[ENA]
¡û
>W1810400038
PYFP01000003
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
4973
4897
-
Ile
GAT
[ENA]
¡û
>W1810400043
PYFP01000006
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
5468
5392
-
Ile
GAT
[ENA]
¡û
>C151062583
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
879470
879546
+
Ile
GAT
[Ensembl]
¡û
>C151062610
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
5110270
5110194
-
Ile
GAT
[Ensembl]
¡û
>C151062612
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
4858309
4858233
-
Ile
GAT
[Ensembl]
¡û
>C11105058
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
830846
830922
+
Ile
GAT
[Ensembl]
¡û
>C11105077
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
4697619
4697543
-
Ile
GAT
[Ensembl]
¡û
>C11105079
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
4445982
4445906
-
Ile
GAT
[Ensembl]
¡û
>C161053579
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
1043350
1043426
+
Ile
GAT
[Ensembl]
¡û
>C161053598
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
5114305
5114229
-
Ile
GAT
[Ensembl]
¡û
>C161053600
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
4862465
4862389
-
Ile
GAT
[Ensembl]
¡û
>C161053627
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
657367
657443
+
Ile
GAT
-
¡û
>C161053653
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
4180777
4180701
-
Ile
GAT
-
¡û
>C161053655
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
3931505
3931429
-
Ile
GAT
-
¡û
>C161053674
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
845150
845226
+
Ile
GAT
[Ensembl]
¡û
>C161053697
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
5145699
5145623
-
Ile
GAT
[Ensembl]
¡û
>C161053699
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
4787842
4787766
-
Ile
GAT
[Ensembl]
¡û
>C161053722
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
657467
657543
+
Ile
GAT
[Ensembl]
¡û
>C161053749
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
4166089
4166013
-
Ile
GAT
[Ensembl]
¡û
>C161053751
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
3916765
3916689
-
Ile
GAT
[Ensembl]
¡û
>C161053772
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
784416
784492
+
Ile
GAT
[Ensembl]
¡û
>C161053797
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
5068319
5068243
-
Ile
GAT
[Ensembl]
¡û
>C161053799
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
4806577
4806501
-
Ile
GAT
[Ensembl]
¡û
>W1610070454
BCTG01000073
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
121
197
+
Ile
GAT
[ENA]
¡û
>W1710067827
BCTG01000073
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
121
197
+
Ile
GAT
[ENA]
¡û
>W1710530388
FNOR01000042
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
3780
3704
-
Ile
GAT
[ENA]
¡û
>W1710556476
FOKF01000085
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
467
391
-
Ile
GAT
[ENA]
¡û
>W1710557555
FOLC01000053
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
3694
3618
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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