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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176790 (88 seq.)
>W1710777837
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
265047
265123
+
Arg
ACG
[ENA]
¡û
>W1710777890
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
240775
240851
+
Arg
ACG
[ENA]
¡û
>W1710892047
LNDJ01000011
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
3359
3283
-
Arg
ACG
[ENA]
¡û
>W1710915840
LNUO01000017
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
503
579
+
Arg
ACG
[ENA]
¡û
>W1711227880
LXWA01000047
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
1132
1056
-
Arg
ACG
[ENA]
¡û
>W1711303097
MAJM01000003
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
171214
171290
+
Arg
ACG
[ENA]
¡û
>W1711682910
MRYA01000003
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
309823
309899
+
Arg
ACG
[ENA]
¡û
>W1711682968
MRYB01000011
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
79682
79758
+
Arg
ACG
[ENA]
¡û
>W1711682982
MRYC01000001
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
137857
137781
-
Arg
ACG
[ENA]
¡û
>C171019141
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
1795249
1795173
-
Arg
ACG
-
¡û
>C171131053
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
230163
230239
+
Arg
ACG
-
¡û
>W131180561
ARNF01000041
Gammaproteobacteria
Psychrobacter lutiphocae DSM 21542 [ARNF]
4688
4764
+
Arg
ACG
[ENA]
¡û
>C015795
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
195179
195255
+
Arg
ACG
[Ensembl]
¡û
>C015958
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
211142
211218
+
Arg
ACG
[Ensembl]
¡û
>C017882
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
409661
409737
+
Arg
ACG
[Ensembl]
¡û
>WENV180101411
OAOU01058818
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
272
348
+
Arg
ACG
[ENA]
¢þ
>w003201
AADI01000001
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
469893
469820
-
Arg
ACG
[ENA]
¡û
>W141086178
AUSW01000025
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
18046
17970
-
Arg
ACG
[ENA]
¡û
>W141195660
AYUI01000026
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
18143
18219
+
Arg
ACG
[ENA]
¡û
>W141199950
AYXM01000039
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
88985
88909
-
Arg
ACG
[ENA]
¡û
>W141199999
AYXN01000024
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
22895
22819
-
Arg
ACG
[ENA]
¡û
>W141200532
AYXZ01000127
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
22978
23054
+
Arg
ACG
[ENA]
¡û
>W141200572
AYYA01000050
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
23219
23295
+
Arg
ACG
[ENA]
¡û
>C08007192
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
195179
195255
+
Arg
ACG
[Ensembl]
¡û
>W141233960
BAWG01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
295702
295778
+
Arg
ACG
[ENA]
¡û
>W141234001
BAWH01000004
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
20075
20151
+
Arg
ACG
[ENA]
¡û
>W141234033
BAWI01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
269598
269674
+
Arg
ACG
[ENA]
¡û
>W141234087
BAWJ01000005
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
135654
135578
-
Arg
ACG
[ENA]
¡û
>WENV182542204
OJAV01010392
[OJAV] seawater metagenome; Sea water
920
844
-
Arg
ACG
[ENA]
¢þ
>WENV182549756
OJBZ01000001
[OJBZ] seawater metagenome; Sea water
302432
302356
-
Arg
ACG
[ENA]
¢þ
>WENV182562306
OJDZ01000611
[OJDZ] seawater metagenome; Sea water
5615
5539
-
Arg
ACG
[ENA]
¢þ
>WENV170014642
AYSL01002181
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
121
45
-
Arg
ACG
[ENA]
¢þ
>WENV170014755
AYSL01009362
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
594
518
-
Arg
ACG
[ENA]
¢þ
>WENV170242508
CEQO01062271
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
182
106
-
Arg
ACG
[ENA]
¢þ
>WENV170290709
CESA01044178
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
714
638
-
Arg
ACG
[ENA]
¢þ
>WENV170291319
CESA01115082
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
222
298
+
Arg
ACG
[ENA]
¢þ
>WENV170563605
CZCB01022590
[CZCB] anaerobic digester metagenome; anaerobic digester
467
543
+
Arg
ACG
[ENA]
¢þ
>WENV170579421
FUFK010038944
[FUFK] metagenome; unknown
43987
43911
-
Arg
ACG
[ENA]
¢þ
>WENV170586879
FUFK010450860
[FUFK] metagenome; unknown
1041
965
-
Arg
ACG
[ENA]
¢þ
>WENV170590569
FUFK010723583
[FUFK] metagenome; unknown
1055
979
-
Arg
ACG
[ENA]
¢þ
>WENV170593626
FUFK010935828
[FUFK] metagenome; unknown
524
448
-
Arg
ACG
[ENA]
¢þ
>WENV170690421
LFRM01340838
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
238
162
-
Arg
ACG
[ENA]
¢þ
>WENV170786437
MDSV01003209
[MDSV] marine metagenome; seawater
16793
16869
+
Arg
ACG
[ENA]
¢þ
>WENV170826674
MDSY01114866
[MDSY] marine metagenome; seawater
4602
4678
+
Arg
ACG
[ENA]
¢þ
>C181056037
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
1974564
1974640
+
Arg
ACG
-
¡û
>C181185194
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
407820
407896
+
Arg
ACG
-
¡û
>C191163856
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2994420
2994344
-
Arg
ACG
-
¡û
>W141552153
JHOL01000012
Gammaproteobacteria
Psychrobacter sp. 310(2012) [JHOL]
1801
1725
-
Arg
ACG
[ENA]
¡û
>W141701327
JMKP01000005
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 [JMKP]
129525
129449
-
Arg
ACG
[ENA]
¡û
>W09103321
AAJC01000014
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
61828
61752
-
Arg
ACG
[ENA]
¡û
>W1910372495
FUGD01000095
Gammaproteobacteria
Psychrobacter pasteurii CIP 110853 [FUGD]
7453
7529
+
Arg
ACG
[ENA]
¡û
>W1910372517
FUGE01000058
Gammaproteobacteria
Psychrobacter piechaudii CIP 110854 [FUGE]
1015
939
-
Arg
ACG
[ENA]
¡û
>W1910377609
FUKN01000014
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
333266
333342
+
Arg
ACG
[ENA]
¡û
>W1910891625
NEXR01000001
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
293130
293206
+
Arg
ACG
[ENA]
¡û
>W1910891785
NEXU01000090
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
14252
14328
+
Arg
ACG
[ENA]
¡û
>W1911203650
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
1457305
1457229
-
Arg
ACG
[ENA]
¡û
>W1911397589
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
1362192
1362116
-
Arg
ACG
[ENA]
¡û
>W1911534861
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
1387782
1387858
+
Arg
ACG
[ENA]
¡û
>W1810155455
PJAS01000052
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
181721
181645
-
Arg
ACG
[ENA]
¡û
>W1810155507
PJAT01000096
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
8417
8493
+
Arg
ACG
[ENA]
¡û
>W1810156193
PJBD01000053
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
21812
21736
-
Arg
ACG
[ENA]
¡û
>W1810156334
PJBF01000058
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
20000
20076
+
Arg
ACG
[ENA]
¡û
>W1810156428
PJBH01000057
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
69681
69605
-
Arg
ACG
[ENA]
¡û
>W1810157253
PJBU01000081
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
19668
19592
-
Arg
ACG
[ENA]
¡û
>W1810157385
PJBX01000167
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
32663
32587
-
Arg
ACG
[ENA]
¡û
>W1810157423
PJBY01000086
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
23770
23846
+
Arg
ACG
[ENA]
¡û
>W1810596402
QGGM01000007
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
11036
11112
+
Arg
ACG
[ENA]
¡û
>W1810671416
QJSU01000001
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
364360
364284
-
Arg
ACG
[ENA]
¡û
>W1810692674
QLKS01000003
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
323724
323648
-
Arg
ACG
[ENA]
¡û
>C151097224
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
1697965
1698041
+
Arg
ACG
-
¡û
>W11163465
AFHU01000074
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
1803
1727
-
Arg
ACG
[ENA]
¡û
>C161042724
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
247819
247895
+
Arg
ACG
-
¡û
>C161042772
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
236980
237056
+
Arg
ACG
[Ensembl]
¡û
>C161079252
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
247094
247170
+
Arg
ACG
[Ensembl]
¡û
>W121043489
AHVZ01000004
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
49503
49427
-
Arg
ACG
[ENA]
¡û
>W1610071726
BCUH01000003
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
11412
11488
+
Arg
ACG
[ENA]
¡û
>W1610112409
CZJV02000099
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
22606
22530
-
Arg
ACG
[ENA]
¡û
>C131017368
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
212289
212365
+
Arg
ACG
[Ensembl]
¡û
>W1610632722
LIQB01000001
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
251735
251659
-
Arg
ACG
[ENA]
¡û
>W1610642023
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
265047
265123
+
Arg
ACG
[ENA]
¡û
>W1610642076
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
240775
240851
+
Arg
ACG
[ENA]
¡û
>W1610752313
LNDJ01000011
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
3359
3283
-
Arg
ACG
[ENA]
¡û
>W1610774079
LNUO01000017
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
503
579
+
Arg
ACG
[ENA]
¡û
>W1611011844
LXWA01000047
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
1132
1056
-
Arg
ACG
[ENA]
¡û
>W1710068928
BCUH01000003
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
11412
11488
+
Arg
ACG
[ENA]
¡û
>W1710115113
CZJV02000099
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
22606
22530
-
Arg
ACG
[ENA]
¡û
>W1710513787
FNAL01000001
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
16803
16879
+
Arg
ACG
[ENA]
¡û
>W1710767154
LIQB01000001
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
251735
251659
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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