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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176811 (7 seq.)
>W1810282689
PSZL01000001
Bacteroidota
Apibacter sp. wkB309 [PSZL]
275125
275051
-
Met
CAT
[ENA]
¡û
>W1810282741
PSZM01000036
Bacteroidota
Apibacter adventoris wkB301 [PSZM]
64879
64953
+
Met
CAT
[ENA]
¡û
>W1810282771
PSZN01000006
Bacteroidota
Apibacter adventoris wkB180 [PSZN]
13791
13865
+
Met
CAT
[ENA]
¡û
>W1610207158
FCOR01000006
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
135108
135184
+
Met
CAT
[ENA]
¡û
>W1610637945
LIVM01000006
Bacteroidota
Apibacter mensalis [LIVM]
135108
135184
+
Met
CAT
[ENA]
¡û
>W1710207852
FCOR01000006
Bacteroidota
Apibacter mensalis R-53146 [FCOR]
135108
135184
+
Met
CAT
[ENA]
¡û
>W1710772718
LIVM01000006
Bacteroidota
Apibacter mensalis [LIVM]
135108
135184
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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