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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176862 (20 seq.)
>W1710890632
LNBW01000054
Bacteroidota
Bacteroidetes bacterium OLB9 [LNBW]
49902
49976
+
Ala
GGC
[ENA]
¡û
>WENV180376845
OBOM01114024
[OBOM] marine metagenome; Seawater
228
152
-
Ala
GGC
[ENA]
¢þ
>W141079188
ATLH01000031
Bacteroidota
Cellulophaga baltica 13 [ATLH]
194771
194847
+
Ala
GGC
[ENA]
¡û
>W141079256
ATLJ01000040
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
5752
5828
+
Ala
GGC
[ENA]
¡û
>WENV183522129
OMOM01000151
[OMOM] seawater metagenome; Sea water
8439
8513
+
Ala
GGC
[ENA]
¢þ
>WENV170271600
CERJ01063989
[CERJ] marine metagenome genome assembly TARA_066_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
831
755
-
Ala
GGC
[ENA]
¢þ
>C181067200
CP022515
Bacteroidota
Arenibacter algicola SMS7 [CP022515]
1271758
1271832
+
Ala
GGC
-
¡û
>C181188066
CP030104
Bacteroidota
Allomuricauda aurantiaca HME9304 [CP030104]
1557605
1557530
-
Ala
GGC
-
¡û
>C191127750
CP034570
Bacteroidota
Maribacter sp. MJ134 [CP034570]
3206952
3207028
+
Ala
GGC
-
¡û
>C191182106
CP040710
Bacteroidota
Aggregatimonas sangjinii F202Z8 [CP040710]
4472347
4472423
+
Ala
GGC
-
¡û
>W141807604
JPOO01000003
Bacteroidota
Arenibacter algicola [JPOO]
2548775
2548849
+
Ala
GGC
[ENA]
¡û
>W1910693631
MDGN01000046
Bacteroidota
Maribacter sp. 4U21 [MDGN]
25310
25386
+
Ala
GGC
[ENA]
¡û
>W1911493066
OBEH01000001
Bacteroidota
Allomuricauda parva DSM 25885 [OBEH]
586181
586105
-
Ala
GGC
[ENA]
¡û
>C151024029
CP007451
Bacteroidota
Draconibacterium orientale FH5 [CP007451]
2690921
2690847
-
Ala
GGC
[Ensembl]
¡û
>W1511346385
JRHC01000008
Bacteroidota
Draconibacterium sediminis JN14CK-3 [JRHC]
42530
42604
+
Ala
GGC
[ENA]
¡û
>W1610584553
LCTZ01000002
Bacteroidota
Allomuricauda eckloniae DK169 [LCTZ]
3067713
3067789
+
Ala
GGC
[ENA]
¡û
>W1610751069
LNBW01000054
Bacteroidota
Bacteroidetes bacterium OLB9 [LNBW]
49902
49976
+
Ala
GGC
[ENA]
¡û
>W1710553605
FOHT01000012
Bacteroidota
Draconibacterium orientale [FOHT]
10977
11051
+
Ala
GGC
[ENA]
¡û
>W1710587886
FQYX01000004
Bacteroidota
Arenibacter nanhaiticus [FQYX]
86195
86271
+
Ala
GGC
[ENA]
¡û
>W1710703744
LCTZ01000002
Bacteroidota
Allomuricauda eckloniae DK169 [LCTZ]
3067713
3067789
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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