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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177425 (9 seq.)
>C171097485
CP019633
Planctomycetota
Sedimentisphaera cyanobacteriorum L21-RPul-D3 [CP019633]
389392
389466
+
Asp
GTC
-
¡û
>C171097486
CP019633
Planctomycetota
Sedimentisphaera cyanobacteriorum L21-RPul-D3 [CP019633]
389490
389564
+
Asp
GTC
-
¡û
>C171097718
CP019646
Planctomycetota
Limihaloglobus sulfuriphilus SM-Chi-D1 [CP019646]
1619733
1619807
+
Asp
GTC
-
¡û
>C171099890
CP019791
Planctomycetota
Anaerohalosphaera lusitana ST-NAGAB-D1 [CP019791]
2187447
2187520
+
Asp
GTC
-
¡û
>C171114991
CP021023
Planctomycetota
Sedimentisphaera salicampi ST-PulAB-D4 [CP021023]
2674359
2674433
+
Asp
GTC
-
¡û
>C171114992
CP021023
Planctomycetota
Sedimentisphaera salicampi ST-PulAB-D4 [CP021023]
2674458
2674533
+
Asp
GTC
-
¡û
>WENV170969874
MTKW01042577
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1003
928
-
Asp
GTC
[ENA]
¢þ
>SRA1026388
SRR035085.199360
454 Sequencing (SRP001806)
319
244
-
Asp
GTC
[SRA]
>SRA1026492
SRR035085.215965
454 Sequencing (SRP001806)
39
114
+
Asp
GTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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