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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177651 (38 seq.)
>C171057625
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
2131536
2131612
+
Ala
GGC
-
¡û
>W131145891
AQGK01000001
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
2806734
2806810
+
Ala
GGC
[ENA]
¡û
>w027796
ABCM01000010
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
180378
180305
-
Ala
GGC
[ENA]
¡û
>WENV180208776
OBAJ01038199
[OBAJ] marine metagenome; Coastal water
207
133
-
Ala
GGC
[ENA]
¢þ
>WENV180357605
OBNN01043235
[OBNN] marine metagenome; Coastal water
231
157
-
Ala
GGC
[ENA]
¢þ
>WENV180393043
OBPP01059799
[OBPP] marine metagenome; ENVO:00002042
266
192
-
Ala
GGC
[ENA]
¢þ
>WENV180394701
OBPS01042957
[OBPS] marine metagenome; ENVO:00002010 seawater
253
179
-
Ala
GGC
[ENA]
¢þ
>WENV180395879
OBPT01219820
[OBPT] marine metagenome; ENVO:00002010 seawater
205
279
+
Ala
GGC
[ENA]
¢þ
>WENV180396246
OBPU01084818
[OBPU] marine metagenome; ENVO:00002010
118
192
+
Ala
GGC
[ENA]
¢þ
>WENV181126082
OEFV01004188
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
900
974
+
Ala
GGC
[ENA]
¢þ
>W141142848
AWRU01000005
Bacteroidota
Pedobacter sp. V48 [AWRU]
38305
38381
+
Ala
GGC
[ENA]
¡û
>WENV182586264
OJHK01000021
[OJHK] seawater metagenome; Sea water
481
555
+
Ala
GGC
[ENA]
¢þ
>WENV170626463
FUWD013223038
[FUWD] metagenome; unknown
1376
1302
-
Ala
GGC
[ENA]
¢þ
>WENV170631382
FUWD013350513
[FUWD] metagenome; unknown
42657
42731
+
Ala
GGC
[ENA]
¢þ
>C181094376
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
3546575
3546500
-
Ala
GGC
-
¡û
>W141727610
JNFF01000002
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
22268
22342
+
Ala
GGC
[ENA]
¡û
>W09109588
ABUJ01000002
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
76247
76171
-
Ala
GGC
[ENA]
¡û
>W09110736
ABVW01000001
Bacteroidota
Flavobacteria bacterium MS024-3C [ABVW]
378878
378802
-
Ala
GGC
[ENA]
¡û
>C09108550
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
4178183
4178259
+
Ala
GGC
[Ensembl]
¡û
>W1911647421
QAJL01000009
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
64479
64404
-
Ala
GGC
[ENA]
¡û
>W1810474658
QAIL01000374
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
36581
36656
+
Ala
GGC
[ENA]
¡û
>W1810503932
QBKM01000010
Bacteroidota
Pedobacter sp. YR016 [QBKM]
8339
8265
-
Ala
GGC
[ENA]
¡û
>W1810676140
QKLU01000004
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
669525
669599
+
Ala
GGC
[ENA]
¡û
>W1810693882
QLLR01000007
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
106035
105961
-
Ala
GGC
[ENA]
¡û
>SRA1025316
SRR035084.549855
454 Sequencing (SRP001805)
162
236
+
Ala
GGC
[SRA]
>SRA1034915
SRR035089.197800
454 Sequencing (SRP001810)
254
180
-
Ala
GGC
[SRA]
>W1511509408
JXRA01000019
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
61699
61775
+
Ala
GGC
[ENA]
¡û
>C161000311
AP014548
Bacteroidota
Nonlabens marinus S1-08 [AP014548]
644899
644823
-
Ala
GGC
[Ensembl]
¡û
>C161049183
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
950105
950029
-
Ala
GGC
[Ensembl]
¡û
>C161073029
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
5738286
5738210
-
Ala
GGC
[Ensembl]
¡û
>W1610612108
LGEL01000007
Bacteroidota
Pedobacter panaciterrae [LGEL]
17805
17881
+
Ala
GGC
[ENA]
¡û
>W1710522100
FNGY01000011
Bacteroidota
Pedobacter steynii [FNGY]
197743
197667
-
Ala
GGC
[ENA]
¡û
>W1710522169
FNGZ01000010
Bacteroidota
Pedobacter antarcticus [FNGZ]
85565
85639
+
Ala
GGC
[ENA]
¡û
>W1710560883
FONS01000010
Bacteroidota
Pedobacter antarcticus [FONS]
37975
37901
-
Ala
GGC
[ENA]
¡û
>W1710575144
FOYX01000001
Bacteroidota
Maribacter stanieri [FOYX]
669835
669761
-
Ala
GGC
[ENA]
¡û
>W1710583229
FQUQ01000002
Bacteroidota
Pedobacter caeni [FQUQ]
90214
90290
+
Ala
GGC
[ENA]
¡û
>W1710606353
FWXT01000001
Bacteroidota
Pedobacter africanus [FWXT]
1465955
1465879
-
Ala
GGC
[ENA]
¡û
>W1710733614
LGEL01000007
Bacteroidota
Pedobacter panaciterrae [LGEL]
17805
17881
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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