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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177689 (23 seq.)
>WENV180663027
OCVV011105830
[OCVV] gut metagenome; gut
320
247
-
Pro
CGG
[ENA]
¢þ
>WENV180663028
OCVV011105830
[OCVV] gut metagenome; gut
320
247
-
Pro
CGG
[ENA]
¢þ
>WENV180729070
ODGU01181219
[ODGU] human metagenome; G_DNA_Supragingival plaque
248
324
+
Pro
CGG
[ENA]
¢þ
>WENV180789023
ODIS01195561
[ODIS] human metagenome; G_DNA_Supragingival plaque
108
32
-
Pro
CGG
[ENA]
¢þ
>WENV180797935
ODJB01170196
[ODJB] human metagenome; G_DNA_Supragingival plaque
310
234
-
Pro
CGG
[ENA]
¢þ
>WENV180816762
ODJP01053404
[ODJP] human metagenome; G_DNA_Tongue dorsum
95
19
-
Pro
CGG
[ENA]
¢þ
>WENV180832957
ODKC01008734
[ODKC] human metagenome; G_DNA_Supragingival plaque
915
839
-
Pro
CGG
[ENA]
¢þ
>WENV180888837
ODMN01004347
[ODMN] human metagenome; G_DNA_Supragingival plaque
3977
4053
+
Pro
CGG
[ENA]
¢þ
>WENV180922668
ODTJ01007962
[ODTJ] human metagenome; G_DNA_Supragingival plaque
365
441
+
Pro
CGG
[ENA]
¢þ
>WENV180924400
ODTK01004420
[ODTK] human metagenome; G_DNA_Supragingival plaque
1637
1713
+
Pro
CGG
[ENA]
¢þ
>WENV180939663
ODTX01066107
[ODTX] human metagenome; G_DNA_Supragingival plaque
362
438
+
Pro
CGG
[ENA]
¢þ
>WENV180945501
ODUC01184695
[ODUC] human metagenome; G_DNA_Supragingival plaque
189
265
+
Pro
CGG
[ENA]
¢þ
>WENV180981926
ODVE01086648
[ODVE] human metagenome; G_DNA_Supragingival plaque
386
310
-
Pro
CGG
[ENA]
¢þ
>WENV180999860
ODVT01088470
[ODVT] human metagenome; G_DNA_Buccal mucosa
277
353
+
Pro
CGG
[ENA]
¢þ
>WENV181063506
ODYP01001150
[ODYP] human metagenome; G_DNA_Supragingival plaque
12590
12666
+
Pro
CGG
[ENA]
¢þ
>WENV181077860
OEAP01190937
[OEAP] human metagenome; G_DNA_Supragingival plaque
146
222
+
Pro
CGG
[ENA]
¢þ
>WENV181080749
OEAS01076686
[OEAS] human metagenome; G_DNA_Supragingival plaque
1025
949
-
Pro
CGG
[ENA]
¢þ
>WENV181080981
OEAS01108697
[OEAS] human metagenome; G_DNA_Supragingival plaque
432
356
-
Pro
CGG
[ENA]
¢þ
>WENV181095961
OEBY01033030
[OEBY] human metagenome; G_DNA_Tongue dorsum
802
726
-
Pro
CGG
[ENA]
¢þ
>W141146160
AWVG01000111
Bacillota
Selenomonas sp. oral taxon 892 oral taxon 892 str. F0426 [AWVG]
38621
38545
-
Pro
CGG
[ENA]
¡û
>C11121870
CP002637
Bacillota
Selenomonas sputigena ATCC 35185 [CP002637]
1175781
1175705
-
Pro
CGG
[Ensembl]
¡û
>W121112117
ALKG01000012
Bacillota
Selenomonas sp. FOBRC6 [ALKG]
13605
13681
+
Pro
CGG
[ENA]
¡û
>W121112651
ALNM01000028
Bacillota
Selenomonas sp. CM52 [ALNM]
69914
69990
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK