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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.17774 (30 seq.)
>W1711767381
MUZU01000002
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
309538
309448
-
Ser
TGA
[ENA]
¡û
>W1711767411
MUZU01000019
Gammaproteobacteria
Pseudocolwellia agarivorans QM50 [MUZU]
19871
19961
+
Ser
TGA
[ENA]
¡û
>C171034472
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
3990207
3990297
+
Ser
TGA
-
¡û
>C171034473
CP014943
Gammaproteobacteria
Colwellia sp. PAMC 21821 [CP014943]
4113744
4113834
+
Ser
TGA
-
¡û
>C171034550
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
4533851
4533941
+
Ser
TGA
-
¡û
>C171034584
CP014944
Gammaproteobacteria
Colwellia sp. PAMC 20917 [CP014944]
194957
194867
-
Ser
TGA
-
¡û
>WENV182540204
OJAF01000032
[OJAF] seawater metagenome; Sea water
6091
6001
-
Ser
TGA
[ENA]
¢þ
>WENV182540213
OJAF01000182
[OJAF] seawater metagenome; Sea water
1523
1433
-
Ser
TGA
[ENA]
¢þ
>WENV182542537
OJAY01014656
[OJAY] seawater metagenome; Sea water
578
488
-
Ser
TGA
[ENA]
¢þ
>WENV182547404
OJBS01002598
[OJBS] seawater metagenome; Sea water
136
46
-
Ser
TGA
[ENA]
¢þ
>WENV182559124
OJDO01001743
[OJDO] seawater metagenome; Sea water
1161
1071
-
Ser
TGA
[ENA]
¢þ
>WENV182564832
OJEF01009159
[OJEF] seawater metagenome; Sea water
763
673
-
Ser
TGA
[ENA]
¢þ
>WENV182567706
OJEP01000070
[OJEP] seawater metagenome; Sea water
43403
43493
+
Ser
TGA
[ENA]
¢þ
>WENV182567748
OJEP01000127
[OJEP] seawater metagenome; Sea water
17651
17561
-
Ser
TGA
[ENA]
¢þ
>WENV182568854
OJEX01000135
[OJEX] seawater metagenome; Sea water
1
91
+
Ser
TGA
[ENA]
¢þ
>WENV182577704
OJGH01001928
[OJGH] seawater metagenome; Sea water
3301
3391
+
Ser
TGA
[ENA]
¢þ
>WENV182585329
OJHH01008977
[OJHH] seawater metagenome; Sea water
1819
1729
-
Ser
TGA
[ENA]
¢þ
>WENV182590605
OJIJ01000261
[OJIJ] seawater metagenome; Sea water
7383
7473
+
Ser
TGA
[ENA]
¢þ
>WENV183522214
OMOM01000843
[OMOM] seawater metagenome; Sea water
3993
4083
+
Ser
TGA
[ENA]
¢þ
>WENV170537980
CEWR01042721
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3405
3495
+
Ser
TGA
[ENA]
¢þ
>WENV170780452
MAAB01001267
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
475
385
-
Ser
TGA
[ENA]
¢þ
>WENV170780456
MAAB01001311
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1794
1884
+
Ser
TGA
[ENA]
¢þ
>C191128344
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
2191545
2191635
+
Ser
TGA
-
¡û
>C191128345
CP034660
Gammaproteobacteria
Colwellia sp. Arc7-635 [CP034660]
2303295
2303385
+
Ser
TGA
-
¡û
>C191130448
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
434776
434866
+
Ser
TGA
-
¡û
>C191130449
CP034759
Gammaproteobacteria
Litorilituus sediminis JCM 17549 [CP034759]
444624
444714
+
Ser
TGA
-
¡û
>W1911770197
QXIO01000002
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
166162
166252
+
Ser
TGA
[ENA]
¡û
>W1911770198
QXIO01000002
Gammaproteobacteria
Colwellia sp. RSH04 [QXIO]
170494
170584
+
Ser
TGA
[ENA]
¡û
>W1810155590
PJAU01000057
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
108945
109035
+
Ser
TGA
[ENA]
¡û
>W1810155598
PJAU01000061
Gammaproteobacteria
Colwellia sp. 75C3 [PJAU]
166117
166027
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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