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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177957 (80 seq.)
>W1710989961
LPWU01000128
Alphaproteobacteria
Acetobacter pasteurianus [LPWU]
36205
36129
-
Arg
ACG
[ENA]
¡û
>W1711143111
LVHD01000003
Alphaproteobacteria
Acetobacter malorum [LVHD]
124320
124244
-
Arg
ACG
[ENA]
¡û
>W1711143157
LVHD01000097
Alphaproteobacteria
Acetobacter malorum [LVHD]
33
109
+
Arg
ACG
[ENA]
¡û
>W1711257931
LYUD01000024
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
17303
17227
-
Arg
ACG
[ENA]
¡û
>C171033006
CP014687
Alphaproteobacteria
Acetobacter persici TMW2.1084 [CP014687]
2336679
2336603
-
Arg
ACG
-
¡û
>C171036193
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
73808
73732
-
Arg
ACG
-
¡û
>C171036238
CP015168
Alphaproteobacteria
Acetobacter ascendens LMG 1591 [CP015168]
1131713
1131637
-
Arg
ACG
-
¡û
>C171120349
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
1649835
1649759
-
Arg
ACG
-
¡û
>C171126448
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
1809849
1809773
-
Arg
ACG
-
¡û
>W141224576
BAIN01000059
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
10049
10125
+
Arg
ACG
[ENA]
¡û
>W141226186
BAJW01000007
Alphaproteobacteria
Acetobacter persici JCM 25330 [BAJW]
34417
34493
+
Arg
ACG
[ENA]
¡û
>W141428621
JEOA01000009
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
79051
79127
+
Arg
ACG
[ENA]
¡û
>WENV170669383
LAHS01000063
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
88658
88582
-
Arg
ACG
[ENA]
¢þ
>C191002676
AP018515
Alphaproteobacteria
Acetobacter orientalis FAN1 [AP018515]
1316462
1316538
+
Arg
ACG
-
¡û
>W141731661
JNJH01000090
Alphaproteobacteria
Acidiphilium angustum ATCC 35903 [JNJH]
6297
6373
+
Arg
ACG
[ENA]
¡û
>W141775534
JOJU01000008
Alphaproteobacteria
Acetobacter malorum [JOJU]
124238
124162
-
Arg
ACG
[ENA]
¡û
>W1910007933
BDER01000064
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
54488
54564
+
Arg
ACG
[ENA]
¡û
>W1910007979
BDES01000062
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
5349
5425
+
Arg
ACG
[ENA]
¡û
>W1910008039
BDET01000077
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
6679
6755
+
Arg
ACG
[ENA]
¡û
>W1910008085
BDEU01000080
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
14073
14149
+
Arg
ACG
[ENA]
¡û
>W1910008139
BDEV01000087
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
14073
14149
+
Arg
ACG
[ENA]
¡û
>W1910008197
BDEW01000072
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
60185
60261
+
Arg
ACG
[ENA]
¡û
>W1910008244
BDEX01000083
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
14073
14149
+
Arg
ACG
[ENA]
¡û
>W1910008303
BDEY01000076
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3284 [BDEY]
60227
60303
+
Arg
ACG
[ENA]
¡û
>W1910008350
BDEZ01000047
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
61169
61245
+
Arg
ACG
[ENA]
¡û
>W1910182326
BJMU01000004
Alphaproteobacteria
Acetobacter orleanensis NBRC 13752 [BJMU]
42768
42692
-
Arg
ACG
[ENA]
¡û
>W1910182370
BJMV01000005
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
88781
88705
-
Arg
ACG
[ENA]
¡û
>C141012356
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
1187940
1188016
+
Arg
ACG
[Ensembl]
¡û
>W1910657447
MAPU01000007
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
61163
61239
+
Arg
ACG
[ENA]
¡û
>W1910753206
MKHC01000004
Alphaproteobacteria
Acetobacter pasteurianus BCRC14145 [MKHC]
54400
54476
+
Arg
ACG
[ENA]
¡û
>W1911410425
NWTP01000002
Alphaproteobacteria
Acetobacter orleanensis CCM 3610 [NWTP]
345283
345359
+
Arg
ACG
[ENA]
¡û
>W1810069722
PEBQ01000212
Alphaproteobacteria
Acetobacter pomorum LHT 2458 [PEBQ]
1530
1454
-
Arg
ACG
[ENA]
¡û
>C10100655
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
2378051
2378127
+
Arg
ACG
[Ensembl]
¡û
>C10100709
AP011121
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01 [AP011121]
2470305
2470381
+
Arg
ACG
[Ensembl]
¡û
>C10100766
AP011128
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-03 [AP011128]
2471512
2471588
+
Arg
ACG
[Ensembl]
¡û
>C10100823
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
2468854
2468930
+
Arg
ACG
[Ensembl]
¡û
>C10100880
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
2468849
2468925
+
Arg
ACG
[Ensembl]
¡û
>C10100937
AP011142
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-22 [AP011142]
2471492
2471568
+
Arg
ACG
[Ensembl]
¡û
>C10100994
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
2471534
2471610
+
Arg
ACG
[Ensembl]
¡û
>C10101051
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
2468867
2468943
+
Arg
ACG
[Ensembl]
¡û
>C161001894
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
2529965
2530041
+
Arg
ACG
-
¡û
>W121122961
BACF01000006
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [BACF]
36205
36129
-
Arg
ACG
[ENA]
¡û
>W121122999
BACG01000007
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
52180
52256
+
Arg
ACG
[ENA]
¡û
>W121126854
CADO01000006
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
54458
54534
+
Arg
ACG
[ENA]
¡û
>W121126891
CADQ01000004
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
42575
42499
-
Arg
ACG
[ENA]
¡û
>W1610040737
BAMV01000007
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
8981
9057
+
Arg
ACG
[ENA]
¡û
>W1610040780
BAMW01000006
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
105437
105361
-
Arg
ACG
[ENA]
¡û
>W1610040852
BAMX01000039
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
24655
24731
+
Arg
ACG
[ENA]
¡û
>W1610040873
BAMY01000012
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
324417
324493
+
Arg
ACG
[ENA]
¡û
>W1610623966
LHZA01000150
Alphaproteobacteria
Acetobacter cerevisiae [LHZA]
45001
45077
+
Arg
ACG
[ENA]
¡û
>W1610624101
LHZC01000055
Alphaproteobacteria
Acetobacter malorum [LHZC]
126074
125998
-
Arg
ACG
[ENA]
¡û
>W1610624230
LHZF01000170
Alphaproteobacteria
Acetobacter malorum [LHZF]
59705
59781
+
Arg
ACG
[ENA]
¡û
>W1610624940
LHZV01000054
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
42802
42726
-
Arg
ACG
[ENA]
¡û
>W1610625032
LHZX01000299
Alphaproteobacteria
Acetobacter malorum [LHZX]
40106
40182
+
Arg
ACG
[ENA]
¡û
>W1610625090
LHZY01000024
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
25437
25513
+
Arg
ACG
[ENA]
¡û
>W1610625135
LHZZ01000631
Alphaproteobacteria
Acetobacter malorum [LHZZ]
1772
1696
-
Arg
ACG
[ENA]
¡û
>W1610625154
LIAA01000009
Alphaproteobacteria
Acetobacter cerevisiae [LIAA]
8025
7949
-
Arg
ACG
[ENA]
¡û
>W1610954119
LVHD01000003
Alphaproteobacteria
Acetobacter malorum [LVHD]
124320
124244
-
Arg
ACG
[ENA]
¡û
>W1610954165
LVHD01000097
Alphaproteobacteria
Acetobacter malorum [LVHD]
33
109
+
Arg
ACG
[ENA]
¡û
>W1611020403
LYUD01000024
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
17303
17227
-
Arg
ACG
[ENA]
¡û
>W1710037935
BAMV01000007
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
8981
9057
+
Arg
ACG
[ENA]
¡û
>W1710037978
BAMW01000006
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
105437
105361
-
Arg
ACG
[ENA]
¡û
>W1710038050
BAMX01000039
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
24655
24731
+
Arg
ACG
[ENA]
¡û
>W1710038071
BAMY01000012
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
324417
324493
+
Arg
ACG
[ENA]
¡û
>W1710597401
FTNE01000011
Alphaproteobacteria
Acidiphilium rubrum [FTNE]
6310
6386
+
Arg
ACG
[ENA]
¡û
>W1710624345
JOMO01000022
Alphaproteobacteria
Acetobacter orientalis [JOMO]
3437
3513
+
Arg
ACG
[ENA]
¡û
>W1710624377
JOMP01000007
Alphaproteobacteria
Acetobacter indonesiensis [JOMP]
255546
255622
+
Arg
ACG
[ENA]
¡û
>W1710624442
JOMQ01000047
Alphaproteobacteria
Acetobacter cibinongensis DsW_47 [JOMQ]
37811
37735
-
Arg
ACG
[ENA]
¡û
>W1710624557
JOPA01000017
Alphaproteobacteria
Acetobacter indonesiensis [JOPA]
17100
17176
+
Arg
ACG
[ENA]
¡û
>W1710624623
JOPC01000003
Alphaproteobacteria
Acetobacter persici [JOPC]
57181
57105
-
Arg
ACG
[ENA]
¡û
>W1710624765
JOPG01000013
Alphaproteobacteria
Acetobacter malorum [JOPG]
47273
47349
+
Arg
ACG
[ENA]
¡û
>W1710624913
JOPK01000007
Alphaproteobacteria
Acetobacter orientalis [JOPK]
4551
4627
+
Arg
ACG
[ENA]
¡û
>W1710755084
LHZA01000150
Alphaproteobacteria
Acetobacter cerevisiae [LHZA]
45001
45077
+
Arg
ACG
[ENA]
¡û
>W1710755219
LHZC01000055
Alphaproteobacteria
Acetobacter malorum [LHZC]
126074
125998
-
Arg
ACG
[ENA]
¡û
>W1710755348
LHZF01000170
Alphaproteobacteria
Acetobacter malorum [LHZF]
59705
59781
+
Arg
ACG
[ENA]
¡û
>W1710756058
LHZV01000054
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
42802
42726
-
Arg
ACG
[ENA]
¡û
>W1710756150
LHZX01000299
Alphaproteobacteria
Acetobacter malorum [LHZX]
40106
40182
+
Arg
ACG
[ENA]
¡û
>W1710756208
LHZY01000024
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
25437
25513
+
Arg
ACG
[ENA]
¡û
>W1710756253
LHZZ01000631
Alphaproteobacteria
Acetobacter malorum [LHZZ]
1772
1696
-
Arg
ACG
[ENA]
¡û
>W1710756272
LIAA01000009
Alphaproteobacteria
Acetobacter cerevisiae [LIAA]
8025
7949
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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