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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177967 (79 seq.)
>W1710861342
LMDN01000006
Actinomycetota
Leifsonia sp. Root4 [LMDN]
14616
14692
+
Pro
TGG
[ENA]
¡û
>W1710862307
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
567690
567766
+
Pro
TGG
[ENA]
¡û
>W1710865433
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
567655
567731
+
Pro
TGG
[ENA]
¡û
>W1710869691
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
626430
626356
-
Pro
TGG
[ENA]
¡û
>W1710873273
LMMR01000004
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
565095
565171
+
Pro
TGG
[ENA]
¡û
>W1710875026
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
675707
675633
-
Pro
TGG
[ENA]
¡û
>W1710875468
LMOK01000001
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
606636
606560
-
Pro
TGG
[ENA]
¡û
>W1710876207
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
626474
626400
-
Pro
TGG
[ENA]
¡û
>W1711173302
LWCT01000012
Actinomycetota
Plantibacter sp. H53 [LWCT]
64887
64961
+
Pro
TGG
[ENA]
¡û
>W1711386882
MEFY01000002
Actinomycetota
Leifsonia sp. SCN 70-46 [MEFY]
1900948
1901022
+
Pro
TGG
[ENA]
¡û
>W131208630
ATIA01000059
Actinomycetota
Leifsonia rubra CMS 76R [ATIA]
172640
172716
+
Pro
TGG
[ENA]
¡û
>W131216939
ATWH01000006
Actinomycetota
Glaciibacter superstes DSM 21135 [ATWH]
271619
271543
-
Pro
TGG
[ENA]
¡û
>W1711461547
MJGW01000017
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
112835
112761
-
Pro
TGG
[ENA]
¡û
>W1711505537
MKVP01000001
Actinomycetota
Micrococcales bacterium 70-64 [MKVP]
2493779
2493853
+
Pro
TGG
[ENA]
¡û
>C171127454
CP021992
Actinomycetota
Cryobacterium sp. LW097 [CP021992]
2118303
2118227
-
Pro
TGG
-
¡û
>w013957
AAOB01000003
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
202960
202887
-
Pro
TGG
[ENA]
¡û
>WENV180016031
FSTY01000044
[FSTY] metagenome; soil
2686
2760
+
Pro
TGG
[ENA]
¢þ
>WENV180016047
FSTY01000327
[FSTY] metagenome; soil
3917
3991
+
Pro
TGG
[ENA]
¢þ
>WENV180016624
FSVO01000063
[FSVO] metagenome; soil
2382
2456
+
Pro
TGG
[ENA]
¢þ
>WENV180016626
FSVO01000076
[FSVO] metagenome; soil
3892
3966
+
Pro
TGG
[ENA]
¢þ
>WENV180017025
FSWJ01000567
[FSWJ] metagenome; soil
49907
49833
-
Pro
TGG
[ENA]
¢þ
>WENV180017278
FSWR01000052
[FSWR] metagenome; soil
55217
55143
-
Pro
TGG
[ENA]
¢þ
>WENV180023974
FTIF01005323
[FTIF] metagenome; soil
25124
25198
+
Pro
TGG
[ENA]
¢þ
>WENV180024070
FTIF01024119
[FTIF] metagenome; soil
445
371
-
Pro
TGG
[ENA]
¢þ
>WENV180033469
FTKK01000825
[FTKK] metagenome; soil
526
452
-
Pro
TGG
[ENA]
¢þ
>WENV180033980
FTKM01017891
[FTKM] metagenome; soil
126
52
-
Pro
TGG
[ENA]
¢þ
>WENV180304348
OBJI01007222
[OBJI] soil metagenome; soil
310
236
-
Pro
TGG
[ENA]
¢þ
>WENV181222560
OFDC01000008
[OFDC] hot springs metagenome; Water
109759
109685
-
Pro
TGG
[ENA]
¢þ
>WENV183697926
OUNK010384212
[OUNK] metagenome; soil
95
21
-
Pro
TGG
[ENA]
¢þ
>WENV183746634
POYE01043404
[POYE] biofilm metagenome; steel pipe from biofilm reactor
146
220
+
Pro
TGG
[ENA]
¢þ
>WENV170784308
MCHG01000706
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
2643
2719
+
Pro
TGG
[ENA]
¢þ
>C181143949
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
1808363
1808289
-
Pro
TGG
-
¡û
>C181143989
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
1672025
1671951
-
Pro
TGG
-
¡û
>C191071489
CP030033
Actinomycetota
Cryobacterium soli GCJ02 [CP030033]
43505
43581
+
Pro
TGG
-
¡û
>C191100993
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
2620362
2620436
+
Pro
TGG
-
¡û
>C191139348
CP035375
Actinomycetota
Salinibacterium sp. UTAS2018 [CP035375]
891898
891824
-
Pro
TGG
-
¡û
>C191182556
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
3742432
3742506
+
Pro
TGG
-
¡û
>W1910784631
MPZN01000053
Actinomycetota
Microterricola pindariensis PON 10 [MPZN]
12917
12993
+
Pro
TGG
[ENA]
¡û
>W1910785515
MQTR01000170
Actinomycetota
Cryobacterium sp. SO1 [MQTR]
48088
48164
+
Pro
TGG
[ENA]
¡û
>W1910857497
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
1276915
1276989
+
Pro
TGG
[ENA]
¡û
>W1910857544
NBXA01000014
Actinomycetota
Subtercola boreus P27444 [NBXA]
8201
8275
+
Pro
TGG
[ENA]
¡û
>W1910857588
NBXB01000017
Actinomycetota
Subtercola boreus P27479 [NBXB]
39192
39266
+
Pro
TGG
[ENA]
¡û
>W1910857630
NBXC01000012
Actinomycetota
Subtercola boreus P27924 [NBXC]
151872
151946
+
Pro
TGG
[ENA]
¡û
>W1910857673
NBXD01000012
Actinomycetota
Subtercola boreus P27979 [NBXD]
151872
151946
+
Pro
TGG
[ENA]
¡û
>W1910857716
NBXE01000017
Actinomycetota
Subtercola boreus P28004 [NBXE]
151860
151934
+
Pro
TGG
[ENA]
¡û
>W1911497891
OCST01000004
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
377878
377804
-
Pro
TGG
[ENA]
¡û
>W1911671577
QGAE01000001
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
597490
597416
-
Pro
TGG
[ENA]
¡û
>W1911798597
QYRT01000044
Actinomycetota
Subtercola vilae DB165 [QYRT]
12234
12308
+
Pro
TGG
[ENA]
¡û
>W1810090195
PGFH01000001
Actinomycetota
Salinibacterium amurskyense DSM 16400 [PGFH]
1321166
1321240
+
Pro
TGG
[ENA]
¡û
>W1810168895
PJJP01000039
Actinomycetota
Cryobacterium sp. N22 [PJJP]
317779
317703
-
Pro
TGG
[ENA]
¡û
>W1810169032
PJJS01000054
Actinomycetota
Cryobacterium sp. M96 [PJJS]
249600
249676
+
Pro
TGG
[ENA]
¡û
>W1810169121
PJJU01000057
Actinomycetota
Cryobacterium sp. M25 [PJJU]
244898
244974
+
Pro
TGG
[ENA]
¡û
>W1810169138
PJJV01000065
Actinomycetota
Cryobacterium sp. M23 [PJJV]
48596
48672
+
Pro
TGG
[ENA]
¡û
>W1810242595
PPXD01000007
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
378041
377965
-
Pro
TGG
[ENA]
¡û
>W1810242655
PPXE01000022
Actinomycetota
Cryobacterium zongtaii TMN-39-1 [PPXE]
314514
314438
-
Pro
TGG
[ENA]
¡û
>W1810242701
PPXF01000058
Actinomycetota
Cryobacterium zongtaii TMB1-8 [PPXF]
653689
653613
-
Pro
TGG
[ENA]
¡û
>W1810277327
PSTT01000047
Actinomycetota
Subtercola sp. Z020 [PSTT]
10339
10265
-
Pro
TGG
[ENA]
¡û
>W1810568856
QEEX01000001
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
653472
653398
-
Pro
TGG
[ENA]
¡û
>W1810569034
QEFB01000001
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
491136
491062
-
Pro
TGG
[ENA]
¡û
>W1810627283
QHLY01000012
Actinomycetota
Cryobacterium arcticum SK-1 [QHLY]
959809
959733
-
Pro
TGG
[ENA]
¡û
>W1810657142
QJHB01000002
Actinomycetota
Homoserinimonas sp. OAct 916 [QJHB]
214188
214114
-
Pro
TGG
[ENA]
¡û
>W1511432352
JUGL01000012
Actinomycetota
Herbiconiux sp. YR403 [JUGL]
448996
449072
+
Pro
TGG
[ENA]
¡û
>C161067225
CP014145
Actinomycetota
Microterricola viridarii ERGS5:02 [CP014145]
1068226
1068302
+
Pro
TGG
[Ensembl]
¡û
>C161095701
CP016282
Actinomycetota
Cryobacterium arcticum PAMC 27867 [CP016282]
2233923
2233847
-
Pro
TGG
[Ensembl]
¡û
>W121043535
AHWA01000002
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
627587
627511
-
Pro
TGG
[ENA]
¡û
>W1610723688
LMDN01000006
Actinomycetota
Leifsonia sp. Root4 [LMDN]
14616
14692
+
Pro
TGG
[ENA]
¡û
>W1610724653
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
567690
567766
+
Pro
TGG
[ENA]
¡û
>W1610727779
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
567655
567731
+
Pro
TGG
[ENA]
¡û
>W1610732037
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
626430
626356
-
Pro
TGG
[ENA]
¡û
>W1610735619
LMMR01000004
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
565095
565171
+
Pro
TGG
[ENA]
¡û
>W1610737372
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
675707
675633
-
Pro
TGG
[ENA]
¡û
>W1610737814
LMOK01000001
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
606636
606560
-
Pro
TGG
[ENA]
¡û
>W1610738553
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
626474
626400
-
Pro
TGG
[ENA]
¡û
>W1610981907
LWCT01000012
Actinomycetota
Plantibacter sp. H53 [LWCT]
64887
64961
+
Pro
TGG
[ENA]
¡û
>W1710520663
FNFU01000011
Actinomycetota
Cryobacterium psychrotolerans [FNFU]
47819
47895
+
Pro
TGG
[ENA]
¡û
>W1710570912
FOVM01000002
Actinomycetota
Mycetocola miduiensis [FOVM]
326512
326588
+
Pro
TGG
[ENA]
¡û
>W1710603951
FUZO01000001
Actinomycetota
Plantibacter cousiniae [FUZO]
2047005
2047079
+
Pro
TGG
[ENA]
¡û
>W1710608060
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
808695
808769
+
Pro
TGG
[ENA]
¡û
>W1710609341
FXWJ01000002
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
574647
574573
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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