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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177969 (90 seq.)
>W1710861316
LMDN01000002
Actinomycetota
Leifsonia sp. Root4 [LMDN]
420036
420110
+
Pro
CGG
[ENA]
¡û
>W1710870302
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
641739
641815
+
Pro
CGG
[ENA]
¡û
>W1710872324
LMLX01000001
Actinomycetota
Agreia sp. Leaf244 [LMLX]
132962
133038
+
Pro
CGG
[ENA]
¡û
>W1710873951
LMNF01000001
Actinomycetota
Agreia sp. Leaf283 [LMNF]
136833
136909
+
Pro
CGG
[ENA]
¡û
>W1710875749
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
611022
610946
-
Pro
CGG
[ENA]
¡û
>W1711603245
MOLR01000020
Actinomycetota
Arthrobacter sp. UCD-GKA [MOLR]
26095
26019
-
Pro
CGG
[ENA]
¡û
>W1711618511
MPBI01000013
Actinomycetota
Glutamicibacter sp. 0426 [MPBI]
1739
1665
-
Pro
CGG
[ENA]
¡û
>C171127464
CP021992
Actinomycetota
Cryobacterium sp. LW097 [CP021992]
530306
530232
-
Pro
CGG
-
¡û
>W131087276
AOCK01000008
Actinomycetota
Paeniglutamicibacter gangotriensis Lz1y [AOCK]
2073
2149
+
Pro
CGG
[ENA]
¡û
>W131216934
ATWH01000005
Actinomycetota
Glaciibacter superstes DSM 21135 [ATWH]
130142
130066
-
Pro
CGG
[ENA]
¡û
>WENV180016231
FSUF01001582
[FSUF] metagenome; soil
1811
1887
+
Pro
CGG
[ENA]
¢þ
>WENV180016995
FSWJ01000314
[FSWJ] metagenome; soil
91
17
-
Pro
CGG
[ENA]
¢þ
>WENV180017032
FSWJ01000638
[FSWJ] metagenome; soil
204
280
+
Pro
CGG
[ENA]
¢þ
>WENV180024099
FTIF01037312
[FTIF] metagenome; soil
71
147
+
Pro
CGG
[ENA]
¢þ
>WENV180029000
FTJI01001893
[FTJI] metagenome; soil
1766
1692
-
Pro
CGG
[ENA]
¢þ
>WENV180029179
FTJI01122378
[FTJI] metagenome; soil
63
137
+
Pro
CGG
[ENA]
¢þ
>WENV180029210
FTJI01188145
[FTJI] metagenome; soil
4812
4886
+
Pro
CGG
[ENA]
¢þ
>WENV180033518
FTKK01196627
[FTKK] metagenome; soil
138
212
+
Pro
CGG
[ENA]
¢þ
>WENV180034524
FTKR01001898
[FTKR] metagenome; soil
1766
1692
-
Pro
CGG
[ENA]
¢þ
>WENV180034700
FTKR01117580
[FTKR] metagenome; soil
63
137
+
Pro
CGG
[ENA]
¢þ
>WENV180034732
FTKR01195139
[FTKR] metagenome; soil
4812
4886
+
Pro
CGG
[ENA]
¢þ
>WENV180269884
OBEQ012110819
[OBEQ] groundwater metagenome; groundwater
930
856
-
Pro
CGG
[ENA]
¢þ
>WENV170784300
MCHG01000572
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
7926
8000
+
Pro
CGG
[ENA]
¢þ
>C181001467
AP017315
Actinomycetota
Microcella alkaliphila JAM AC0309 [AP017315]
612738
612664
-
Pro
CGG
-
¡û
>C181143976
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
2156961
2157035
+
Pro
CGG
-
¡û
>C191071500
CP030033
Actinomycetota
Cryobacterium soli GCJ02 [CP030033]
1901705
1901779
+
Pro
CGG
-
¡û
>C191100362
CP033081
Actinomycetota
Glutamicibacter nicotianae OTC-16 [CP033081]
606289
606363
+
Pro
CGG
-
¡û
>W141809701
JPRS01000066
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
11917
11843
-
Pro
CGG
[ENA]
¡û
>W1910438315
FWCI01000014
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
4318
4242
-
Pro
CGG
[ENA]
¡û
>W1910784599
MPZN01000014
Actinomycetota
Microterricola pindariensis PON 10 [MPZN]
26063
25989
-
Pro
CGG
[ENA]
¡û
>W1910785486
MQTR01000017
Actinomycetota
Cryobacterium sp. SO1 [MQTR]
39985
40059
+
Pro
CGG
[ENA]
¡û
>W1910857525
NBWZ01000001
Actinomycetota
Subtercola boreus K300 [NBWZ]
720515
720441
-
Pro
CGG
[ENA]
¡û
>W1910857540
NBXA01000007
Actinomycetota
Subtercola boreus P27444 [NBXA]
44193
44118
-
Pro
CGG
[ENA]
¡û
>W1910857584
NBXB01000011
Actinomycetota
Subtercola boreus P27479 [NBXB]
94064
93989
-
Pro
CGG
[ENA]
¡û
>W1910857628
NBXC01000008
Actinomycetota
Subtercola boreus P27924 [NBXC]
69387
69313
-
Pro
CGG
[ENA]
¡û
>W1910857670
NBXD01000007
Actinomycetota
Subtercola boreus P27979 [NBXD]
93610
93536
-
Pro
CGG
[ENA]
¡û
>W1910857714
NBXE01000008
Actinomycetota
Subtercola boreus P28004 [NBXE]
69277
69203
-
Pro
CGG
[ENA]
¡û
>W1911567696
PCPT01000012
Actinomycetota
Arthrobacter sp. MYb227 [PCPT]
2699
2775
+
Pro
CGG
[ENA]
¡û
>W1911798587
QYRT01000019
Actinomycetota
Subtercola vilae DB165 [QYRT]
4439
4513
+
Pro
CGG
[ENA]
¡û
>W1911823587
QZVS01000033
Actinomycetota
Cryobacterium melibiosiphilum Hh39 [QZVS]
8450
8524
+
Pro
CGG
[ENA]
¡û
>W1810089799
PGEY01000001
Actinomycetota
Glutamicibacter mysorens DSM 12798 [PGEY]
3448247
3448321
+
Pro
CGG
[ENA]
¡û
>W1810121347
PHUH01000001
Actinomycetota
Microcella sp. HL-107 [PHUH]
1451534
1451608
+
Pro
CGG
[ENA]
¡û
>W1810168634
PJJJ01000037
Actinomycetota
Cryobacterium sp. Y82 [PJJJ]
57945
58019
+
Pro
CGG
[ENA]
¡û
>W1810168676
PJJK01000118
Actinomycetota
Cryobacterium sp. Y62 [PJJK]
83894
83968
+
Pro
CGG
[ENA]
¡û
>W1810168701
PJJL01000069
Actinomycetota
Cryobacterium sp. Y57 [PJJL]
204060
203985
-
Pro
CGG
[ENA]
¡û
>W1810168753
PJJM01000095
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
100122
100048
-
Pro
CGG
[ENA]
¡û
>W1810168770
PJJN01000022
Actinomycetota
Cryobacterium sp. Y29 [PJJN]
24056
23981
-
Pro
CGG
[ENA]
¡û
>W1810168827
PJJO01000055
Actinomycetota
Cryobacterium sp. Y11 [PJJO]
195720
195794
+
Pro
CGG
[ENA]
¡û
>W1810168865
PJJP01000022
Actinomycetota
Cryobacterium sp. N22 [PJJP]
12622
12696
+
Pro
CGG
[ENA]
¡û
>W1810168929
PJJQ01000033
Actinomycetota
Cryobacterium sp. N21 [PJJQ]
234445
234371
-
Pro
CGG
[ENA]
¡û
>W1810168968
PJJR01000051
Actinomycetota
Cryobacterium sp. N19 [PJJR]
232894
232820
-
Pro
CGG
[ENA]
¡û
>W1810168991
PJJS01000027
Actinomycetota
Cryobacterium sp. M96 [PJJS]
4792
4718
-
Pro
CGG
[ENA]
¡û
>W1810169076
PJJT01000091
Actinomycetota
Cryobacterium sp. M91 [PJJT]
303978
304052
+
Pro
CGG
[ENA]
¡û
>W1810169092
PJJU01000043
Actinomycetota
Cryobacterium sp. M25 [PJJU]
63553
63627
+
Pro
CGG
[ENA]
¡û
>W1810169148
PJJV01000072
Actinomycetota
Cryobacterium sp. M23 [PJJV]
61151
61077
-
Pro
CGG
[ENA]
¡û
>W1810169213
PJJW01000041
Actinomycetota
Cryobacterium sp. M15 [PJJW]
274572
274647
+
Pro
CGG
[ENA]
¡û
>W1810240357
PPTG01000002
Actinomycetota
Cryobacterium aureum Hh31 [PPTG]
113879
113805
-
Pro
CGG
[ENA]
¡û
>W1810242624
PPXD01000033
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
53467
53393
-
Pro
CGG
[ENA]
¡û
>W1810242635
PPXE01000010
Actinomycetota
Cryobacterium zongtaii TMN-39-1 [PPXE]
53431
53357
-
Pro
CGG
[ENA]
¡û
>W1810242691
PPXF01000055
Actinomycetota
Cryobacterium zongtaii TMB1-8 [PPXF]
32629
32555
-
Pro
CGG
[ENA]
¡û
>W1810277330
PSTT01000071
Actinomycetota
Subtercola sp. Z020 [PSTT]
79995
80069
+
Pro
CGG
[ENA]
¡û
>W1810282005
PSXW01000016
Actinomycetota
Clavibacter michiganensis AY2B8 [PSXW]
74418
74494
+
Pro
CGG
[ENA]
¡û
>SRA1004319
SRR002328.274888
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
170
244
+
Pro
CGG
[SRA]
>W1810568831
QEEX01000001
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
1158130
1158204
+
Pro
CGG
[ENA]
¡û
>W1810627262
QHLY01000009
Actinomycetota
Cryobacterium arcticum SK-1 [QHLY]
70730
70656
-
Pro
CGG
[ENA]
¡û
>W1810707123
QMKQ01000041
Actinomycetota
Arthrobacter sp. AQ5-05 [QMKQ]
22833
22757
-
Pro
CGG
[ENA]
¡û
>W1511317448
JPXF01000182
Actinomycetota
Cryobacterium roopkundense RuG17 [JPXF]
1185
1259
+
Pro
CGG
[ENA]
¡û
>W1511432362
JUGL01000014
Actinomycetota
Herbiconiux sp. YR403 [JUGL]
89522
89448
-
Pro
CGG
[ENA]
¡û
>W1511483970
JWMD01000032
Actinomycetota
Arthrobacter sp. W1 [JWMD]
4243
4317
+
Pro
CGG
[ENA]
¡û
>W1511524515
JYFC01000004
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
191569
191493
-
Pro
CGG
[ENA]
¡û
>C161045429
CP012750
Actinomycetota
Glutamicibacter halophytocola KLBMP 5180 [CP012750]
611047
611123
+
Pro
CGG
[Ensembl]
¡û
>C161067238
CP014145
Actinomycetota
Microterricola viridarii ERGS5:02 [CP014145]
2529233
2529307
+
Pro
CGG
[Ensembl]
¡û
>C161095712
CP016282
Actinomycetota
Cryobacterium arcticum PAMC 27867 [CP016282]
579241
579167
-
Pro
CGG
[Ensembl]
¡û
>W1610067436
BCQO01000010
Actinomycetota
Glutamicibacter mysorens NBRC 103060 [BCQO]
3219
3293
+
Pro
CGG
[ENA]
¡û
>W1610112285
CZJT01000088
Actinomycetota
Paeniglutamicibacter antarcticus [CZJT]
3180
3256
+
Pro
CGG
[ENA]
¡û
>W1610723662
LMDN01000002
Actinomycetota
Leifsonia sp. Root4 [LMDN]
420036
420110
+
Pro
CGG
[ENA]
¡û
>W1610732648
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
641739
641815
+
Pro
CGG
[ENA]
¡û
>W1610734670
LMLX01000001
Actinomycetota
Agreia sp. Leaf244 [LMLX]
132962
133038
+
Pro
CGG
[ENA]
¡û
>W1610736297
LMNF01000001
Actinomycetota
Agreia sp. Leaf283 [LMNF]
136833
136909
+
Pro
CGG
[ENA]
¡û
>W1610738095
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
611022
610946
-
Pro
CGG
[ENA]
¡û
>W1610754111
LNFD01000333
Actinomycetota
Actinomycetales bacterium Ga0077552 [LNFD]
15186
15260
+
Pro
CGG
[ENA]
¡û
>W1710064809
BCQO01000010
Actinomycetota
Glutamicibacter mysorens NBRC 103060 [BCQO]
3219
3293
+
Pro
CGG
[ENA]
¡û
>W1710114989
CZJT01000088
Actinomycetota
Paeniglutamicibacter antarcticus [CZJT]
3180
3256
+
Pro
CGG
[ENA]
¡û
>W1710520651
FNFU01000006
Actinomycetota
Cryobacterium psychrotolerans [FNFU]
114919
114845
-
Pro
CGG
[ENA]
¡û
>W1710523521
FNIB01000002
Actinomycetota
Cryobacterium flavum [FNIB]
188279
188353
+
Pro
CGG
[ENA]
¡û
>W1710546926
FOCN01000007
Actinomycetota
Cryobacterium luteum [FOCN]
97519
97445
-
Pro
CGG
[ENA]
¡û
>W1710563682
FOPW01000007
Actinomycetota
Cryobacterium levicorallinum [FOPW]
172398
172324
-
Pro
CGG
[ENA]
¡û
>W1710602506
FUYG01000004
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
122561
122485
-
Pro
CGG
[ENA]
¡û
>W1710608508
FXAY01000001
Actinomycetota
Agreia pratensis [FXAY]
500880
500956
+
Pro
CGG
[ENA]
¡û
>W1710609294
FXWI01000001
Actinomycetota
Agreia sp. VKM Ac-1783 [FXWI]
406385
406309
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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