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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177977 (108 seq.)
>W1711007687
LQPJ01000029
Actinomycetota
Mycobacterium palustre [LQPJ]
23522
23448
-
Leu
TAA
[ENA]
¡û
>W1711007999
LQPP01000042
Actinomycetota
Mycolicibacterium peregrinum [LQPP]
266401
266477
+
Leu
TAA
[ENA]
¡û
>W1711169821
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
1059036
1059110
+
Leu
TAA
[ENA]
¡û
>W1711221491
LXRE01000003
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
54991
54917
-
Leu
TAA
[ENA]
¡û
>W1711234523
LYCQ01000298
Actinomycetota
Nocardia farcinica [LYCQ]
19843
19917
+
Leu
TAA
[ENA]
¡û
>W1711277266
LZIU01000080
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZIU]
22824
22750
-
Leu
TAA
[ENA]
¡û
>W1711281941
LZMP01000008
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
104468
104542
+
Leu
TAA
[ENA]
¡û
>W1711492265
MKKG01000011
Actinomycetota
Gordonia sp. CNJ-863 [MKKG]
182126
182050
-
Leu
TAA
[ENA]
¡û
>W1711776898
MVKV01000002
Actinomycetota
Gordonia sp. IITR100 [MVKV]
334849
334923
+
Leu
TAA
[ENA]
¡û
>W1711792642
MWKW01000001
Actinomycetota
Mycobacterium kansasii [MWKW]
1816416
1816342
-
Leu
TAA
[ENA]
¡û
>W1712004242
NEGT01000006
Actinomycetota
Mycobacteroides abscessus [NEGT]
673655
673731
+
Leu
TAA
[ENA]
¡û
>W1712061709
NGFO01000022
Actinomycetota
Gordonia lacunae [NGFO]
20471
20545
+
Leu
TAA
[ENA]
¡û
>C171116026
CP021122
Actinomycetota
Mycobacteroides abscessus subsp. massiliense FLAC047 [CP021122]
1162279
1162355
+
Leu
TAA
-
¡û
>W131156549
AQPW01000005
Actinomycetota
Gordonia terrae C-6 [AQPW]
69385
69309
-
Leu
TAA
[ENA]
¡û
>W131239466
BANS01000001
Actinomycetota
Gordonia amicalis NBRC 100051 [BANS]
54377
54303
-
Leu
TAA
[ENA]
¡û
>W131240925
BAOQ01000045
Actinomycetota
Gordonia paraffinivorans NBRC 108238 [BAOQ]
33967
34043
+
Leu
TAA
[ENA]
¡û
>WENV180697553
ODDE01001227
[ODDE] human metagenome; G_DNA_Supragingival plaque
409
484
+
Leu
TAA
[ENA]
¢þ
>WENV180726760
ODGU01000451
[ODGU] human metagenome; G_DNA_Supragingival plaque
411
486
+
Leu
TAA
[ENA]
¢þ
>WENV180732865
ODGY01006321
[ODGY] human metagenome; G_DNA_Supragingival plaque
1437
1362
-
Leu
TAA
[ENA]
¢þ
>WENV180733847
ODGZ01001018
[ODGZ] human metagenome; G_DNA_Supragingival plaque
408
483
+
Leu
TAA
[ENA]
¢þ
>WENV180735558
ODHB01000018
[ODHB] human metagenome; G_DNA_Supragingival plaque
77267
77192
-
Leu
TAA
[ENA]
¢þ
>WENV180739056
ODHD01003806
[ODHD] human metagenome; G_DNA_Supragingival plaque
1723
1798
+
Leu
TAA
[ENA]
¢þ
>WENV180750010
ODHS01000239
[ODHS] human metagenome; G_DNA_Supragingival plaque
3452
3378
-
Leu
TAA
[ENA]
¢þ
>WENV180777248
ODIL01000655
[ODIL] human metagenome; G_DNA_Supragingival plaque
8797
8722
-
Leu
TAA
[ENA]
¢þ
>WENV180778254
ODIM01002363
[ODIM] human metagenome; G_DNA_Supragingival plaque
4938
4862
-
Leu
TAA
[ENA]
¢þ
>WENV180781972
ODIP01010582
[ODIP] human metagenome; G_DNA_Supragingival plaque
1434
1359
-
Leu
TAA
[ENA]
¢þ
>WENV180786771
ODIS01000169
[ODIS] human metagenome; G_DNA_Supragingival plaque
34956
34881
-
Leu
TAA
[ENA]
¢þ
>WENV180795953
ODJB01000728
[ODJB] human metagenome; G_DNA_Supragingival plaque
15938
15863
-
Leu
TAA
[ENA]
¢þ
>WENV180803946
ODJG01000192
[ODJG] human metagenome; G_DNA_Supragingival plaque
46843
46767
-
Leu
TAA
[ENA]
¢þ
>WENV180813253
ODJO01000231
[ODJO] human metagenome; G_DNA_Supragingival plaque
37090
37014
-
Leu
TAA
[ENA]
¢þ
>WENV180833994
ODKD01001683
[ODKD] human metagenome; G_DNA_Supragingival plaque
2702
2777
+
Leu
TAA
[ENA]
¢þ
>WENV180836210
ODKE01065226
[ODKE] human metagenome; G_DNA_Supragingival plaque
502
427
-
Leu
TAA
[ENA]
¢þ
>WENV180843696
ODKN01008349
[ODKN] human metagenome; G_DNA_Supragingival plaque
1517
1442
-
Leu
TAA
[ENA]
¢þ
>WENV180846688
ODKT01019008
[ODKT] human metagenome; G_DNA_Supragingival plaque
2032
1957
-
Leu
TAA
[ENA]
¢þ
>WENV180860231
ODLD01033751
[ODLD] human metagenome; G_DNA_Supragingival plaque
486
561
+
Leu
TAA
[ENA]
¢þ
>WENV180888916
ODMN01005964
[ODMN] human metagenome; G_DNA_Supragingival plaque
1657
1732
+
Leu
TAA
[ENA]
¢þ
>WENV180925015
ODTK01031200
[ODTK] human metagenome; G_DNA_Supragingival plaque
712
787
+
Leu
TAA
[ENA]
¢þ
>WENV180927161
ODTM01000019
[ODTM] human metagenome; G_DNA_Supragingival plaque
4078
4153
+
Leu
TAA
[ENA]
¢þ
>WENV180933268
ODTR01000004
[ODTR] human metagenome; G_DNA_Supragingival plaque
161912
161838
-
Leu
TAA
[ENA]
¢þ
>WENV180934451
ODTS01000085
[ODTS] human metagenome; G_DNA_Subgingival plaque
35591
35665
+
Leu
TAA
[ENA]
¢þ
>WENV180939649
ODTX01063923
[ODTX] human metagenome; G_DNA_Supragingival plaque
526
450
-
Leu
TAA
[ENA]
¢þ
>WENV180944998
ODUC01056264
[ODUC] human metagenome; G_DNA_Supragingival plaque
588
513
-
Leu
TAA
[ENA]
¢þ
>WENV180958763
ODUL01036439
[ODUL] human metagenome; G_DNA_Supragingival plaque
17
92
+
Leu
TAA
[ENA]
¢þ
>WENV180964274
ODUO01000877
[ODUO] human metagenome; G_DNA_Supragingival plaque
1664
1739
+
Leu
TAA
[ENA]
¢þ
>WENV180973849
ODUW01022396
[ODUW] human metagenome; G_DNA_Supragingival plaque
1
76
+
Leu
TAA
[ENA]
¢þ
>WENV180986531
ODVK01000060
[ODVK] human metagenome; G_DNA_Supragingival plaque
9883
9958
+
Leu
TAA
[ENA]
¢þ
>WENV180998579
ODVT01000821
[ODVT] human metagenome; G_DNA_Buccal mucosa
3305
3380
+
Leu
TAA
[ENA]
¢þ
>WENV181002636
ODVX01000957
[ODVX] human metagenome; G_DNA_Supragingival plaque
4093
4168
+
Leu
TAA
[ENA]
¢þ
>WENV181007670
ODWE01000437
[ODWE] human metagenome; G_DNA_Supragingival plaque
32559
32484
-
Leu
TAA
[ENA]
¢þ
>WENV181019160
ODWU01000905
[ODWU] human metagenome; G_DNA_Supragingival plaque
408
483
+
Leu
TAA
[ENA]
¢þ
>WENV181030011
ODXF01018448
[ODXF] human metagenome; G_DNA_Supragingival plaque
597
522
-
Leu
TAA
[ENA]
¢þ
>WENV181050650
ODYD01038083
[ODYD] human metagenome; G_DNA_Supragingival plaque
613
538
-
Leu
TAA
[ENA]
¢þ
>WENV181068220
ODZI01185096
[ODZI] human metagenome; G_DNA_Supragingival plaque
167
241
+
Leu
TAA
[ENA]
¢þ
>WENV181070055
OEAE01000186
[OEAE] human metagenome; G_DNA_Supragingival plaque
1812
1887
+
Leu
TAA
[ENA]
¢þ
>WENV181076735
OEAP01012210
[OEAP] human metagenome; G_DNA_Supragingival plaque
411
486
+
Leu
TAA
[ENA]
¢þ
>WENV181082531
OEAV01000040
[OEAV] human metagenome; G_DNA_Supragingival plaque
76112
76037
-
Leu
TAA
[ENA]
¢þ
>WENV181090358
OEBC01000285
[OEBC] human metagenome; G_DNA_Supragingival plaque
408
483
+
Leu
TAA
[ENA]
¢þ
>WENV181107823
OEEI01025401
[OEEI] human metagenome; G_DNA_Supragingival plaque
662
738
+
Leu
TAA
[ENA]
¢þ
>WENV181138180
OEGJ01150748
[OEGJ] human metagenome; G_DNA_Supragingival plaque
62
136
+
Leu
TAA
[ENA]
¢þ
>WENV181143688
OEHM01004800
[OEHM] human metagenome; G_DNA_Supragingival plaque
1394
1319
-
Leu
TAA
[ENA]
¢þ
>WENV181145835
OEHQ01000141
[OEHQ] human metagenome; G_DNA_Supragingival plaque
46709
46634
-
Leu
TAA
[ENA]
¢þ
>WENV181156298
OEIE01008664
[OEIE] human metagenome; G_DNA_Supragingival plaque
409
484
+
Leu
TAA
[ENA]
¢þ
>WENV181160560
OEIK01014097
[OEIK] human metagenome; G_DNA_Supragingival plaque
1523
1448
-
Leu
TAA
[ENA]
¢þ
>WENV181178001
OEJS01039626
[OEJS] human metagenome; G_DNA_Supragingival plaque
710
635
-
Leu
TAA
[ENA]
¢þ
>WENV181180056
OEJT01060461
[OEJT] human metagenome; G_DNA_Supragingival plaque
121
46
-
Leu
TAA
[ENA]
¢þ
>WENV181180393
OEJU01000043
[OEJU] human metagenome; G_DNA_Supragingival plaque
76102
76027
-
Leu
TAA
[ENA]
¢þ
>WENV181182490
OEJV01012905
[OEJV] human metagenome; G_DNA_Supragingival plaque
35
110
+
Leu
TAA
[ENA]
¢þ
>W141143107
AWSB01000016
Actinomycetota
Actinobaculum sp. oral taxon 183 oral taxon 183 str. F0552 [AWSB]
4092
4168
+
Leu
TAA
[ENA]
¡û
>W141144154
AWTB01000008
Actinomycetota
Gordonia amicalis CCMA-559 [AWTB]
12462
12536
+
Leu
TAA
[ENA]
¡û
>W141200026
AYXO01000001
Actinomycetota
Gordonia alkanivorans CGMCC 6845 [AYXO]
143444
143368
-
Leu
TAA
[ENA]
¡û
>W141256038
CBVP010000094
Actinomycetota
Gordonia alkanivorans s104 [CBVP]
7346
7270
-
Leu
TAA
[ENA]
¡û
>WENV183508554
OMHE01000779
[OMHE] human oral metagenome; human oral
1724
1650
-
Leu
TAA
[ENA]
¢þ
>WENV170566526
FKKE01043452
[FKKE] freshwater metagenome; freshwater
1931
2005
+
Leu
TAA
[ENA]
¢þ
>WENV170653291
JRYI01051651
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
160
234
+
Leu
TAA
[ENA]
¢þ
>C181181640
CP029604
Actinomycetota
Gordonia terrae NRRL B-16283 [CP029604]
1873393
1873319
-
Leu
TAA
-
¡û
>C191020802
CP022580
Actinomycetota
Gordonia rubripertincta CWB2 [CP022580]
1736647
1736572
-
Leu
TAA
-
¡û
>C191050800
CP027114
Actinomycetota
Gordonia alkanivorans YC-RL2 [CP027114]
4350972
4351047
+
Leu
TAA
-
¡û
>C191178127
CP040503
Actinomycetota
Actinomyces sp. oral taxon 848 str. F0332 [CP040503]
1896191
1896265
+
Leu
TAA
-
¡û
>C191208411
LR134353
Actinomycetota
Mycolicibacterium flavescens NCTC10271 [LR134353]
1080168
1080243
+
Leu
TAA
-
¡û
>W09109104
ABTV01000019
Actinomycetota
Gordonia bronchialis DSM 43247 [ABTV]
34237
34163
-
Leu
TAA
[ENA]
¡û
>W09134717
ACUY01000018
Actinomycetota
Actinomyces sp. oral taxon 848 oral taxon 848 str. F0332 [ACUY]
13177
13251
+
Leu
TAA
[ENA]
¡û
>W141756186
JNXA01000002
Actinomycetota
Gordonia terrae [JNXA]
230535
230609
+
Leu
TAA
[ENA]
¡û
>W1910408156
FVEC01000002
Actinomycetota
Mycobacteroides abscessus subsp. massiliense 301 [FVEC]
953006
952931
-
Leu
TAA
[ENA]
¡û
>W1910611751
LFLR01000033
Actinomycetota
Gordonia paraffinivorans MTZ 041 [LFLR]
17360
17436
+
Leu
TAA
[ENA]
¡û
>W1810189523
PKJC01000002
Actinomycetota
Gordonia terrae UMB0777 [PKJC]
357579
357653
+
Leu
TAA
[ENA]
¡û
>C151084436
CP011545
Actinomycetota
Corynebacterium testudinoris DSM 44614 [CP011545]
860763
860839
+
Leu
TAA
[Ensembl]
¡û
>C10107088
CP001802
Actinomycetota
Gordonia bronchialis DSM 43247 [CP001802]
1680912
1680838
-
Leu
TAA
[Ensembl]
¡û
>W1511350586
JRML01000038
Actinomycetota
Mycobacterium sp. UM_Kg17 [JRML]
28636
28562
-
Leu
TAA
[ENA]
¡û
>W11184665
BACI01000033
Actinomycetota
Gordonia alkanivorans NBRC 16433 [BACI]
54707
54631
-
Leu
TAA
[ENA]
¡û
>C161100064
CP016594
Actinomycetota
Gordonia terrae 3612 [CP016594]
1872141
1872067
-
Leu
TAA
-
¡û
>W121007834
AGAQ01000733
Actinomycetota
Mycobacterium avium subsp. avium Env 77 [AGAQ]
719
643
-
Leu
TAA
[ENA]
¡û
>W1610051039
BBGK01001153
Actinomycetota
Gordonia amicalis NBRC 100051 = JCM 11271 [BBGK]
285
359
+
Leu
TAA
[ENA]
¡û
>W1610051099
BBGN01000113
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
1806
1882
+
Leu
TAA
[ENA]
¡û
>W121124371
BAFD01000040
Actinomycetota
Gordonia terrae NBRC 100016 [BAFD]
39800
39726
-
Leu
TAA
[ENA]
¡û
>W121126529
BAHB01000039
Actinomycetota
Gordonia rubripertincta NBRC 101908 [BAHB]
64125
64049
-
Leu
TAA
[ENA]
¡û
>W121126697
BAHE01000024
Actinomycetota
Gordonia namibiensis NBRC 108229 [BAHE]
79228
79152
-
Leu
TAA
[ENA]
¡û
>C131001596
CP002907
Actinomycetota
Gordonia sp. KTR9 [CP002907]
1792927
1792853
-
Leu
TAA
[Ensembl]
¡û
>W1610601099
LFOE01000047
Actinomycetota
Mycolicibacter kumamotonensis kumamotonense [LFOE]
20582
20506
-
Leu
TAA
[ENA]
¡û
>W1610638751
LIYC01000004
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
153984
154060
+
Leu
TAA
[ENA]
¡û
>W1610979018
LVZK01000001
Actinomycetota
Peptidiphaga gingivicola BA112 [LVZK]
1059036
1059110
+
Leu
TAA
[ENA]
¡û
>W1611006009
LXRE01000003
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
54991
54917
-
Leu
TAA
[ENA]
¡û
>W1611036551
LZIU01000080
Actinomycetota
Mycolicibacter heraklionensis heraklionense [LZIU]
22824
22750
-
Leu
TAA
[ENA]
¡û
>W1611041226
LZMP01000008
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
104468
104542
+
Leu
TAA
[ENA]
¡û
>W1710047438
BBGK01001153
Actinomycetota
Gordonia amicalis NBRC 100051 = JCM 11271 [BBGK]
285
359
+
Leu
TAA
[ENA]
¡û
>W1710047498
BBGN01000113
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
1806
1882
+
Leu
TAA
[ENA]
¡û
>W1710072031
BCXB01000006
Actinomycetota
Rhodococcus marinonascens NBRC 14363 [BCXB]
179703
179629
-
Leu
TAA
[ENA]
¡û
>W1710527892
FNLM01000034
Actinomycetota
Gordonia westfalica [FNLM]
2159671
2159747
+
Leu
TAA
[ENA]
¡û
>W1710774582
LIYC01000004
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
153984
154060
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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