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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.177988 (63 seq.)
>W1710796465
LJSC01000037
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
139627
139551
-
Arg
ACG
[ENA]
¡û
>W1710852526
LLVU01000023
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
223489
223413
-
Arg
ACG
[ENA]
¡û
>W1710852578
LLVV01000023
Alphaproteobacteria
Rhodobacter capsulatus [LLVV]
224449
224373
-
Arg
ACG
[ENA]
¡û
>W1711421711
MHZR01000015
Alphaproteobacteria
Rhodobacteraceae bacterium GWE1_64_9 [MHZR]
10280
10356
+
Arg
ACG
[ENA]
¡û
>W1711421768
MHZS01000134
Alphaproteobacteria
Rhodobacteraceae bacterium GWF1_65_7 [MHZS]
3316
3240
-
Arg
ACG
[ENA]
¡û
>W1711506146
MKWD01000032
Alphaproteobacteria
Rhodobacterales bacterium 65-51 [MKWD]
159462
159386
-
Arg
ACG
[ENA]
¡û
>C171067782
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
2993670
2993594
-
Arg
ACG
-
¡û
>C171107679
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
2241737
2241661
-
Arg
ACG
-
¡û
>W131221542
AUAO01000001
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
808228
808304
+
Arg
ACG
[ENA]
¡û
>WENV180593988
OCOY01008441
[OCOY] marine metagenome; ENVO:00002010
593
517
-
Arg
ACG
[ENA]
¢þ
>WENV181171346
OEIV010203360
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
356
432
+
Arg
ACG
[ENA]
¢þ
>WENV181222789
OFDC01000270
[OFDC] hot springs metagenome; Water
42528
42604
+
Arg
ACG
[ENA]
¢þ
>WENV181371527
OFQV01012451
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
211
135
-
Arg
ACG
[ENA]
¢þ
>WENV181378450
OFRB01006376
[OFRB] wastewater metagenome; Exp Tend CN 0WW
1090
1014
-
Arg
ACG
[ENA]
¢þ
>WENV181378983
OFRC01007112
[OFRC] wastewater metagenome; Exp Tend CN 10WW
353
429
+
Arg
ACG
[ENA]
¢þ
>WENV181381737
OFRF01005069
[OFRF] wastewater metagenome; Exp Tend CN 50WW
1124
1048
-
Arg
ACG
[ENA]
¢þ
>W141189650
AYNO01000125
Alphaproteobacteria
Rhodobacter sp. CACIA14H1 [AYNO]
6587
6663
+
Arg
ACG
[ENA]
¡û
>W141191548
AYPR01000005
Alphaproteobacteria
Rhodobacter capsulatus DE442 [AYPR]
157038
157114
+
Arg
ACG
[ENA]
¡û
>W141191696
AYPY01000003
Alphaproteobacteria
Rhodobacter capsulatus YW1 [AYPY]
92520
92444
-
Arg
ACG
[ENA]
¡û
>W141191758
AYPZ01000027
Alphaproteobacteria
Rhodobacter capsulatus YW2 [AYPZ]
157079
157155
+
Arg
ACG
[ENA]
¡û
>W141191813
AYQA01000038
Alphaproteobacteria
Rhodobacter capsulatus B6 [AYQA]
157421
157497
+
Arg
ACG
[ENA]
¡û
>W141191841
AYQB01000006
Alphaproteobacteria
Rhodobacter capsulatus Y262 [AYQB]
157104
157180
+
Arg
ACG
[ENA]
¡û
>W141191887
AYQC01000005
Alphaproteobacteria
Rhodobacter capsulatus R121 [AYQC]
157071
157147
+
Arg
ACG
[ENA]
¡û
>WENV170009732
APMI01002303
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2221
2297
+
Arg
ACG
[ENA]
¢þ
>WENV170020718
BBPE01020644
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1414
1338
-
Arg
ACG
[ENA]
¢þ
>WENV170680626
LFEF01004837
[LFEF] freshwater metagenome; waterbloom
4051
3975
-
Arg
ACG
[ENA]
¢þ
>WENV170710274
LNFM01001425
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
54328
54252
-
Arg
ACG
[ENA]
¢þ
>WENV170710854
LNFM01002826
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
17912
17836
-
Arg
ACG
[ENA]
¢þ
>WENV170711905
LNFM01008231
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
19700
19775
+
Arg
ACG
[ENA]
¢þ
>WENV170712012
LNFM01009081
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
23742
23666
-
Arg
ACG
[ENA]
¢þ
>WENV170712152
LNFM01010195
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8634
8558
-
Arg
ACG
[ENA]
¢þ
>WENV170712266
LNFM01011619
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
17
93
+
Arg
ACG
[ENA]
¢þ
>WENV170714007
LNFM01050496
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
77
1
-
Arg
ACG
[ENA]
¢þ
>WENV170973368
MTKY01032892
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
539
615
+
Arg
ACG
[ENA]
¢þ
>C181044810
CP020470
Alphaproteobacteria
Fuscovulum blasticum 28/5 [CP020470]
1646958
1646882
-
Arg
ACG
-
¡û
>C181169760
CP028918
Alphaproteobacteria
Gemmobacter aquarius HYN0069 [CP028918]
453220
453296
+
Arg
ACG
-
¡û
>C181194189
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
1352345
1352269
-
Arg
ACG
-
¡û
>C191123082
CP034328
Alphaproteobacteria
Tabrizicola piscis K13M18 [CP034328]
1625442
1625366
-
Arg
ACG
-
¡û
>C141006332
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
3055512
3055588
+
Arg
ACG
[Ensembl]
¡û
>C141006333
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
3055795
3055871
+
Arg
ACG
[Ensembl]
¡û
>W1910574854
JQHS01000004
Alphaproteobacteria
Falsirhodobacter deserti W402 [JQHS]
929576
929500
-
Arg
ACG
[ENA]
¡û
>W1911495127
OBMP01000009
Alphaproteobacteria
Rhodobacter sp. JA431 [OBMP]
116609
116533
-
Arg
ACG
[ENA]
¡û
>W1911495345
OBMT01000001
Alphaproteobacteria
Rhodobacter maris JA276 [OBMT]
642165
642089
-
Arg
ACG
[ENA]
¡û
>W1911581855
PGOI01000005
Alphaproteobacteria
Pseudorhodobacter sp. MZDSW-24AT [PGOI]
39851
39927
+
Arg
ACG
[ENA]
¡û
>W1911696754
QMJY01000005
Alphaproteobacteria
Tabrizicola thermarum YIM 73036 [QMJY]
54777
54853
+
Arg
ACG
[ENA]
¡û
>W1911787284
QXXQ01000002
Alphaproteobacteria
Gemmobacter lutimaris YJ-T1-11 [QXXQ]
466439
466515
+
Arg
ACG
[ENA]
¡û
>W1810174040
PJON01000007
Alphaproteobacteria
Tabrizicola aquatica RCRI19 [PJON]
18554
18478
-
Arg
ACG
[ENA]
¡û
>W1810444956
PZKE01000012
Alphaproteobacteria
Fuscovulum blasticum DSM 2131 [PZKE]
10232
10156
-
Arg
ACG
[ENA]
¡û
>W1810486252
QAXT01000003
Alphaproteobacteria
Rhodobacter aestuarii JA296 [QAXT]
39802
39878
+
Arg
ACG
[ENA]
¡û
>W1810504082
QBKP01000004
Alphaproteobacteria
Gemmobacter caeni DSM 21823 [QBKP]
344951
345027
+
Arg
ACG
[ENA]
¡û
>W1810672415
QJTK01000003
Alphaproteobacteria
Rhodobacter viridis JA737 [QJTK]
96388
96464
+
Arg
ACG
[ENA]
¡û
>W1810685818
QKZO01000006
Alphaproteobacteria
Rhodobacter capsulatus DSM 1710 [QKZO]
224011
223935
-
Arg
ACG
[ENA]
¡û
>C10110601
CP001312
Alphaproteobacteria
Rhodobacter capsulatus SB 1003 [CP001312]
379004
379080
+
Arg
ACG
[Ensembl]
¡û
>WENV058339
AACY023325077
Marine microbial communities from Global Ocean Sampling (GOS)
1108
1030
-
Arg
ACG
[ENA]
>W1610081478
BDDO01000003
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
136785
136709
-
Arg
ACG
[ENA]
¡û
>W1610660422
LJSC01000037
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
139627
139551
-
Arg
ACG
[ENA]
¡û
>W1610715665
LLVU01000023
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
223489
223413
-
Arg
ACG
[ENA]
¡û
>W1610715717
LLVV01000023
Alphaproteobacteria
Rhodobacter capsulatus [LLVV]
224449
224373
-
Arg
ACG
[ENA]
¡û
>W1710080129
BDDO01000003
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
136785
136709
-
Arg
ACG
[ENA]
¡û
>W1710508107
FMVT01000011
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
39933
39857
-
Arg
ACG
[ENA]
¡û
>W1710514446
FNAY01000003
Alphaproteobacteria
Rhodobacter capsulatus [FNAY]
224320
224244
-
Arg
ACG
[ENA]
¡û
>W1710546370
FOCE01000001
Alphaproteobacteria
Gemmobacter aquatilis [FOCE]
468397
468321
-
Arg
ACG
[ENA]
¡û
>W1710598810
FTOG01000002
Alphaproteobacteria
Rhodobacter aestuarii [FTOG]
381268
381192
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK