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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178062 (107 seq.)
>W1710855065
LLXZ01000176
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
22670
22746
+
Met
CAT
[ENA]
¡û
>W1710855083
LLYA01000002
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
170546
170470
-
Met
CAT
[ENA]
¡û
>W1710855147
LLYB01000065
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
165057
165133
+
Met
CAT
[ENA]
¡û
>W1710859345
LMCB01000069
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
32098
32022
-
Met
CAT
[ENA]
¡û
>W1710859368
LMCC01000005
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
139
215
+
Met
CAT
[ENA]
¡û
>W1710859532
LMCE01000159
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
102381
102305
-
Met
CAT
[ENA]
¡û
>W1710875330
LMOH01000020
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
1250
1174
-
Met
CAT
[ENA]
¡û
>W1710878186
LMQT01000001
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
772922
772846
-
Met
CAT
[ENA]
¡û
>W1710878328
LMQW01000003
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
121574
121650
+
Met
CAT
[ENA]
¡û
>W1710878451
LMQY01000074
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
121517
121593
+
Met
CAT
[ENA]
¡û
>W1711317166
MAXB01000044
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
136288
136212
-
Met
CAT
[ENA]
¡û
>W1711317201
MAXC01000003
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
171085
171009
-
Met
CAT
[ENA]
¡û
>W1711385424
MEEE01000395
Alphaproteobacteria
Mesorhizobium sp. SCN 65-12 [MEEE]
691
767
+
Met
CAT
[ENA]
¡û
>W131182173
ARQE01000001
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
78303
78227
-
Met
CAT
[ENA]
¡û
>W131182174
ARQE01000001
Alphaproteobacteria
Aureimonas ureilytica DSM 18598 [ARQE]
78184
78108
-
Met
CAT
[ENA]
¡û
>WENV180020327
FTCZ01001600
[FTCZ] metagenome; soil
270106
270182
+
fMet
CAT
[ENA]
¢þ
>WENV180020328
FTCZ01001600
[FTCZ] metagenome; soil
298374
298450
+
fMet
CAT
[ENA]
¢þ
>WENV180105478
OAPD01070068
[OAPD] marine metagenome; 2010
19
95
+
fMet
CAT
[ENA]
¢þ
>WENV181308349
OFIS01006281
[OFIS] sludge metagenome; sludge
1322
1246
-
fMet
CAT
[ENA]
¢þ
>WENV181402516
OFTY01003043
[OFTY] sludge metagenome; sludge
228
152
-
fMet
CAT
[ENA]
¢þ
>W141151098
AXAU01000005
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
360580
360656
+
Met
CAT
[ENA]
¡û
>WENV182951597
OKVU01004900
[OKVU] human gut metagenome; human gut
719
643
-
fMet
CAT
[ENA]
¢þ
>WENV182953475
OKVY01001290
[OKVY] human gut metagenome; human gut
2287
2211
-
fMet
CAT
[ENA]
¢þ
>WENV183092504
OLLF01000086
[OLLF] soil metagenome; soil
16366
16442
+
fMet
CAT
[ENA]
¢þ
>WENV183725137
PJQE01165203
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
293
217
-
fMet
CAT
[ENA]
¢þ
>WENV170781811
MAAC01000789
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
42
118
+
Met
CAT
[ENA]
¢þ
>WENV170781943
MAAC01004901
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
5181
5105
-
Met
CAT
[ENA]
¢þ
>WENV170782077
MAAC01008017
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
11175
11099
-
Met
CAT
[ENA]
¢þ
>WENV170782104
MAAC01008458
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
43
119
+
Met
CAT
[ENA]
¢þ
>WENV170782128
MAAC01009381
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
125997
125921
-
Met
CAT
[ENA]
¢þ
>WENV170782636
MAAC01011018
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
9982
9906
-
Met
CAT
[ENA]
¢þ
>C181175716
CP029176
Alphaproteobacteria
Acidibrevibacterium fodinaquatile G45-3 [CP029176]
2791676
2791600
-
Met
CAT
-
¡û
>C191125837
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
4504619
4504695
+
Met
CAT
-
¡û
>W1910285228
FREX01000014
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
302
378
+
Met
CAT
[ENA]
¡û
>W1911242779
NSGA01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
216199
216123
-
Met
CAT
[ENA]
¡û
>W1911538951
OMPG01000007
Alphaproteobacteria
Pseudovibrio ascidiaceicola AU243 [OMPG]
102022
101946
-
Met
CAT
[ENA]
¡û
>W1911538963
OMPG01000019
Alphaproteobacteria
Pseudovibrio ascidiaceicola AU243 [OMPG]
165
241
+
Met
CAT
[ENA]
¡û
>W1911798352
QYRN01000012
Alphaproteobacteria
Aureimonas flava M2BS4Y-1 [QYRN]
69591
69515
-
Met
CAT
[ENA]
¡û
>W1810390404
PXYK01000076
Alphaproteobacteria
Mesorhizobium ephedrae 6GN30 [PXYK]
688
612
-
Met
CAT
[ENA]
¡û
>W1810487616
QAYR01000002
Alphaproteobacteria
Agrobacterium pusense KCJK7997 [QAYR]
50
126
+
Met
CAT
[ENA]
¡û
>SRA1015271
SRR023845.532807
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
98
174
+
Met
CAT
[SRA]
>C161003898
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
331705
331629
-
Met
CAT
[Ensembl]
¡û
>C161003899
CP006367
Alphaproteobacteria
Aureimonas sp. AU20 [CP006367]
331584
331508
-
Met
CAT
[Ensembl]
¡û
>C161097208
CP016428
Alphaproteobacteria
Bradyrhizobium icense LMTR 13 [CP016428]
7403751
7403675
-
Met
CAT
[Ensembl]
¡û
>W1610042613
BAXV01000049
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
37
113
+
Met
CAT
[ENA]
¡û
>W1610042619
BAXV01000101
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
10177
10101
-
Met
CAT
[ENA]
¡û
>W1610056465
BBWH01000028
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
101507
101583
+
Met
CAT
[ENA]
¡û
>W1610056528
BBWI01000025
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
170240
170316
+
Met
CAT
[ENA]
¡û
>W1610056529
BBWI01000025
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
170361
170437
+
Met
CAT
[ENA]
¡û
>W1610056590
BBWJ01000062
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
23409
23333
-
Met
CAT
[ENA]
¡û
>W1610056626
BBWK01000067
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
37896
37820
-
Met
CAT
[ENA]
¡û
>W1610056665
BBWL01000033
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
57541
57465
-
Met
CAT
[ENA]
¡û
>W1610056666
BBWL01000033
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
57420
57344
-
Met
CAT
[ENA]
¡û
>W1610056738
BBWM01000067
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
25813
25889
+
Met
CAT
[ENA]
¡û
>W1610056739
BBWM01000067
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
25933
26009
+
Met
CAT
[ENA]
¡û
>W1610057027
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
111803
111727
-
Met
CAT
[ENA]
¡û
>W1610057028
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
111683
111607
-
Met
CAT
[ENA]
¡û
>W1610057037
BBWT01000009
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
9010
9086
+
Met
CAT
[ENA]
¡û
>W1610057038
BBWT01000009
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
9129
9205
+
Met
CAT
[ENA]
¡û
>W1610585575
LCWX01000027
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
5584
5508
-
Met
CAT
[ENA]
¡û
>W1610588118
LDPZ01000015
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
82124
82200
+
Met
CAT
[ENA]
¡û
>W1610588119
LDPZ01000015
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
82244
82320
+
Met
CAT
[ENA]
¡û
>W1610588190
LDQA01000047
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
48989
48913
-
Met
CAT
[ENA]
¡û
>W1610588191
LDQA01000047
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
48869
48793
-
Met
CAT
[ENA]
¡û
>W1610717406
LLXZ01000176
Alphaproteobacteria
Bradyrhizobium jicamae [LLXZ]
22670
22746
+
Met
CAT
[ENA]
¡û
>W1610717424
LLYA01000002
Alphaproteobacteria
Bradyrhizobium retamae [LLYA]
170546
170470
-
Met
CAT
[ENA]
¡û
>W1610717488
LLYB01000065
Alphaproteobacteria
Bradyrhizobium lablabi [LLYB]
165057
165133
+
Met
CAT
[ENA]
¡û
>W1610721691
LMCB01000069
Alphaproteobacteria
Pseudovibrio axinellae [LMCB]
32098
32022
-
Met
CAT
[ENA]
¡û
>W1610721714
LMCC01000005
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
139
215
+
Met
CAT
[ENA]
¡û
>W1610721878
LMCE01000159
Alphaproteobacteria
Pseudovibrio sp. Ad26 [LMCE]
102381
102305
-
Met
CAT
[ENA]
¡û
>W1610737676
LMOH01000020
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
1250
1174
-
Met
CAT
[ENA]
¡û
>W1610740532
LMQT01000001
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
772922
772846
-
Met
CAT
[ENA]
¡û
>W1610740674
LMQW01000003
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
121574
121650
+
Met
CAT
[ENA]
¡û
>W1610740797
LMQY01000074
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
121517
121593
+
Met
CAT
[ENA]
¡û
>W1611061236
MAXB01000044
Alphaproteobacteria
Bradyrhizobium paxllaeri [MAXB]
136288
136212
-
Met
CAT
[ENA]
¡û
>W1611061271
MAXC01000003
Alphaproteobacteria
Bradyrhizobium sp. LMTR 3 [MAXC]
171085
171009
-
Met
CAT
[ENA]
¡û
>W1710039707
BAXV01000049
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
37
113
+
Met
CAT
[ENA]
¡û
>W1710039713
BAXV01000101
Alphaproteobacteria
Pseudovibrio sp. JCM 19062 [BAXV]
10177
10101
-
Met
CAT
[ENA]
¡û
>W1710053164
BBWH01000028
Alphaproteobacteria
Aureimonas sp. AU12 [BBWH]
101507
101583
+
Met
CAT
[ENA]
¡û
>W1710053227
BBWI01000025
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
170240
170316
+
Met
CAT
[ENA]
¡û
>W1710053228
BBWI01000025
Alphaproteobacteria
Aureimonas sp. AU20 [BBWI]
170361
170437
+
Met
CAT
[ENA]
¡û
>W1710053289
BBWJ01000062
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
23409
23333
-
Met
CAT
[ENA]
¡û
>W1710053325
BBWK01000067
Alphaproteobacteria
Aureimonas sp. AU4 [BBWK]
37896
37820
-
Met
CAT
[ENA]
¡û
>W1710053364
BBWL01000033
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
57541
57465
-
Met
CAT
[ENA]
¡û
>W1710053365
BBWL01000033
Alphaproteobacteria
Aureimonas sp. AU40 [BBWL]
57420
57344
-
Met
CAT
[ENA]
¡û
>W1710053437
BBWM01000067
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
25813
25889
+
Met
CAT
[ENA]
¡û
>W1710053438
BBWM01000067
Alphaproteobacteria
Aureimonas sp. D3 [BBWM]
25933
26009
+
Met
CAT
[ENA]
¡û
>W1710053726
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
111803
111727
-
Met
CAT
[ENA]
¡û
>W1710053727
BBWS01000057
Alphaproteobacteria
Aureimonas sp. N4 [BBWS]
111683
111607
-
Met
CAT
[ENA]
¡û
>W1710053736
BBWT01000009
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
9010
9086
+
Met
CAT
[ENA]
¡û
>W1710053737
BBWT01000009
Alphaproteobacteria
Aureimonas ureilytica [BBWT]
9129
9205
+
Met
CAT
[ENA]
¡û
>W1710524487
FNIT01000008
Alphaproteobacteria
Aureimonas jatrophae [FNIT]
145868
145944
+
Met
CAT
[ENA]
¡û
>W1710527498
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
148791
148867
+
Met
CAT
[ENA]
¡û
>W1710527519
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
3324618
3324694
+
Met
CAT
[ENA]
¡û
>W1710527537
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
4517396
4517472
+
Met
CAT
[ENA]
¡û
>W1710527549
FNLB01000006
Alphaproteobacteria
Pseudovibrio sp. Tun.PSC04-5.I4 Tun.PHSC04-5.I4 [FNLB]
2484816
2484740
-
Met
CAT
[ENA]
¡û
>W1710550668
FOFM01000001
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
1073832
1073756
-
Met
CAT
[ENA]
¡û
>W1710550722
FOFM01000011
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
111546
111470
-
Met
CAT
[ENA]
¡û
>W1710550724
FOFM01000024
Alphaproteobacteria
Pseudovibrio axinellae [FOFM]
18934
18858
-
Met
CAT
[ENA]
¡û
>W1710561281
FOOA01000017
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
84910
84834
-
Met
CAT
[ENA]
¡û
>W1710567055
FOSK01000017
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
255
331
+
Met
CAT
[ENA]
¡û
>W1710567058
FOSK01000021
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
51756
51680
-
Met
CAT
[ENA]
¡û
>W1710704766
LCWX01000027
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
5584
5508
-
Met
CAT
[ENA]
¡û
>W1710707398
LDPZ01000015
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
82124
82200
+
Met
CAT
[ENA]
¡û
>W1710707399
LDPZ01000015
Alphaproteobacteria
Aureimonas ureilytica [LDPZ]
82244
82320
+
Met
CAT
[ENA]
¡û
>W1710707470
LDQA01000047
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
48989
48913
-
Met
CAT
[ENA]
¡û
>W1710707471
LDQA01000047
Alphaproteobacteria
Aureimonas ureilytica [LDQA]
48869
48793
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK